SMTL ID : 4pwx.1

Crystal structure of an ATP-bound Get3-Get4-Get5 complex from S.cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 5.40 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 22 residues within 4Å: Chain A: G.29, G.30, G.32, K.33, T.34, T.35, N.63, P.171, N.274, P.317, L.318, C.319, E.322, I.323, F.332 Chain B: K.28, G.29, P.171, E.247, L.249, R.293 Ligands: MG.2 16 PLIP interactions: 11 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:G.30, A:G.32, A:K.33, A:T.34, A:T.35, A:T.35, A:N.63, A:N.274, A:P.317, A:C.319, B:G.29, B:E.247, B:L.249 Salt bridges: A:K.33, B:K.28, B:K.28 ATP.4: 20 residues within 4Å: Chain A: K.28, G.29, P.171, E.247, L.249 Chain B: G.29, G.30, G.32, K.33, T.34, T.35, N.63, N.274, L.318, C.319, G.321, E.322, I.323, F.332 Ligands: MG.5 15 PLIP interactions: 10 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:G.30, B:G.32, B:K.33, B:T.34, B:T.35, B:T.35, B:N.63, B:N.274, B:C.319, A:G.29, A:E.247, A:L.249 Salt bridges: B:K.33, A:K.28, A:K.28

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.33, T.34, D.168 Ligands: ATP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.34, A:D.168 MG.5: 4 residues within 4Å: Chain B: K.33, T.34, D.168 Ligands: ATP.4 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.34, B:D.168

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.287, C.290 Chain B: C.287, C.290 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:C.290, B:C.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gristick, H.B. et al., Crystal structure of ATP-bound Get3-Get4-Get5 complex reveals regulation of Get3 by Get4. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-04-09

Peptides

ATPase GET3: AB
Golgi to ER traffic protein 4: CE
Ubiquitin-like protein MDY2: DF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

E
C

D
F

F
D

ATPase GET3

Golgi to ER traffic protein 4

Ubiquitin-like protein MDY2

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