SMTL ID : 4pxa.1

DEAD-box RNA helicase DDX3X Cancer-associated mutant D354V

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: T.41, I.43, F.67, Y.85, R.87, P.88, T.89, Q.92, T.111, G.112, S.113, G.114, K.115, T.116 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:I.43, A:Y.85, A:R.87, A:T.89, A:Q.92, A:G.112, A:S.113, A:G.114, A:K.115, A:T.116, A:T.116, A:T.116 Salt bridges: A:K.115 pi-Stacking: A:Y.85, A:Y.85

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 8 residues within 4Å: Chain A: G.187, T.208, P.209, G.210, R.211, F.242, Q.362 Ligands: PO4.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.187, A:T.208, A:G.210, A:R.211, A:Q.362 PO4.3: 3 residues within 4Å: Chain A: P.453, S.454, W.455 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.454, A:W.455, A:W.455 PO4.4: 6 residues within 4Å: Chain A: G.187, G.210, R.211, D.214 Ligands: PO4.2, PO4.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.210 Salt bridges: A:R.211 PO4.5: 7 residues within 4Å: Chain A: G.187, G.188, R.211, S.361, Q.362, R.363 Ligands: PO4.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.188, A:R.211, A:Q.362, A:R.363 PO4.6: 4 residues within 4Å: Chain A: K.102, K.227, Y.228, H.262 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.260 Salt bridges: A:K.102, A:K.227, A:H.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Epling, L.B. et al., Cancer-Associated Mutants of RNA Helicase DDX3X Are Defective in RNA-Stimulated ATP Hydrolysis. J.Mol.Biol. (2015)

Release Date

2015-03-11

Peptides

ATP-dependent RNA helicase DDX3X: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ATP-dependent RNA helicase DDX3X