SMTL ID : 4pz8.1

PCE1 guanylyltransferase bound to SPT5 CTD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: K.332, A.335, N.336, H.337, T.340 Ligands: SO4.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.336, A:H.337, A:T.340 Salt bridges: A:K.332 SO4.2: 4 residues within 4Å: Chain A: K.332, R.333, D.334 Ligands: SO4.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.333, A:D.334 Salt bridges: A:K.332 SO4.3: 1 residues within 4Å: Chain A: R.282 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.282 SO4.4: 5 residues within 4Å: Chain A: P.244, K.245, S.353, K.354, E.355 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.245, A:K.354 Salt bridges: A:K.245 SO4.5: 4 residues within 4Å: Chain A: D.251, R.329, K.332, N.336 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.336 Salt bridges: A:R.329, A:K.332 SO4.6: 2 residues within 4Å: Chain A: R.158, K.162 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.158, A:K.162 SO4.7: 3 residues within 4Å: Chain A: H.81, Y.84, H.101 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.81, A:H.101 SO4.8: 3 residues within 4Å: Chain A: R.158, L.159, K.162 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.159 Salt bridges: A:R.158, A:K.162 SO4.9: 2 residues within 4Å: Chain A: Y.292, R.322 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.292 Salt bridges: A:R.322 SO4.10: 4 residues within 4Å: Chain A: L.200, H.202, R.365, Y.369 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.202 SO4.11: 3 residues within 4Å: Chain A: T.37, S.38, T.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.38, A:S.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Doamekpor, S.K. et al., How an mRNA capping enzyme reads distinct RNA polymerase II and Spt5 CTD phosphorylation codes. Genes Dev. (2014)

Release Date

2014-06-25

Peptides

mRNA-capping enzyme subunit alpha: A
Transcription elongation factor spt5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

mRNA-capping enzyme subunit alpha

Transcription elongation factor spt5

Related Entries With Identical Sequence