SMTL ID : 4pzt.1

Crystal structure of p300 histone acetyltransferase domain in complex with an inhibitor, Acetonyl-Coenzyme A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x SOP: [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]METHYL (3R)-3-HYDROXY-2,2-DIMETHYL-4-OXO-4-{[3-OXO-3-({2-[(2-OXOPROPYL)THIO]ETHYL}AMINO)PROPYL]AMINO}BUTYL DIHYDROGEN DIPHOSPHATE(Non-covalent)

SOP.1: 21 residues within 4Å: Chain A: S.110, Y.111, L.112, D.113, S.114, R.124, T.125, Y.128, W.150, C.152, P.153, P.154, Y.160, Q.169, K.170, I.171, P.172, R.176, L.177, W.180, F.181 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:Y.128, A:Y.160, A:L.177 Hydrogen bonds: A:L.112, A:L.112, A:S.114, A:R.124, A:T.125, A:Q.169, A:I.171 Water bridges: A:K.121, A:K.121, A:R.124, A:R.124, A:K.170, A:K.173, A:R.176, A:R.176 Salt bridges: A:K.121, A:R.124, A:R.124 pi-Cation interactions: A:R.176, A:R.176

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 10 residues within 4Å: Chain A: Y.108, H.148, I.149, W.150, I.200, D.221, W.223, F.309, F.310, V.311 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.221 DMS.3: 5 residues within 4Å: Chain A: W.150, F.222, H.305, V.308, F.309 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:H.305 DMS.4: 9 residues within 4Å: Chain A: Q.178, K.182, Y.197, K.198, D.199, K.306, E.307, F.309, F.310 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:F.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maksimoska, J. et al., Structure of the p300 Histone Acetyltransferase Bound to Acetyl-Coenzyme A and Its Analogues. Biochemistry (2014)

Release Date

2014-06-11

Peptides

Histone acetyltransferase p300: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase p300

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