SMTL ID : 4q0w.1

he catalytic core of Rad2 in complex with DNA substrate (complex II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: G.1, E.171, E.173, D.192, D.194, D.243 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.173, A:D.194, H2O.2, H2O.7 CA.3: 5 residues within 4Å: Chain B: G.1, E.173, D.192, D.194, D.243 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.173, B:D.192, B:D.194, H2O.19

2 x K: POTASSIUM ION(Non-covalent)

K.2: 5 residues within 4Å: Chain A: L.239, L.240, L.248, M.251 Chain D: C.10 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:L.248, H2O.1, H2O.2, H2O.4 K.4: 5 residues within 4Å: Chain B: L.239, L.240, L.248, M.251 Chain C: C.11 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:L.248, B:M.251, H2O.15, H2O.19, H2O.21

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mietus, M. et al., Crystal structure of the catalytic core of Rad2: insights into the mechanism of substrate binding. Nucleic Acids Res. (2014)

Release Date

2014-08-27

Peptides

DNA repair protein RAD2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA repair protein RAD2

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