SMTL ID : 4q1z.1

Crystal structure of a DUF4876 family protein (BT_1938) from Bacteroides thetaiotaomicron VPI-5482 at 2.50 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 4 residues within 4Å: Chain A: D.309, R.347, D.370, N.372 No protein-ligand interaction detected (PLIP) UNX.2: 5 residues within 4Å: Chain A: E.224, D.234, Q.235, A.237, D.239 No protein-ligand interaction detected (PLIP)

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 7 residues within 4Å: Chain A: P.154, K.160, L.161, P.162, D.289, S.291, K.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.291, A:K.292 PEG.4: 7 residues within 4Å: Chain A: A.346, R.347, L.349, E.379, V.382, R.388, N.389 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.389 PEG.5: 8 residues within 4Å: Chain A: W.164, G.169, N.170, Y.172, K.323, R.324, V.325, P.326 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.169, A:K.323 Water bridges: A:Y.174

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 5 residues within 4Å: Chain A: N.171, Y.172, E.275, P.303, K.305 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.305, A:Y.306 PGE.7: 6 residues within 4Å: Chain A: D.72, E.74, N.76, Y.78, K.104 Ligands: PGE.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.76, A:Y.78, A:K.104 PGE.8: 6 residues within 4Å: Chain A: N.76, K.104, S.106, D.370, N.372 Ligands: PGE.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.76, A:K.104 Water bridges: A:S.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a hypothetical protein (BT1938) from Bacteroides thetaiotaomicron VPI-5482 at 2.50 A resolution. To be published

Release Date

2014-04-23

Peptides

Putative lipoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative lipoprotein