SMTL ID : 4q2m.1

Structure of the E. coli YajR Transporter YAM Domain Combined Iodine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.49 Å

Oligo State

monomer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 1 residues within 4Å: Ligands: CD.4 No protein-ligand interaction detected (PLIP) ACY.2: 3 residues within 4Å: Chain A: S.55, T.58, N.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.59

2 x CD: CADMIUM ION(Non-covalent)

CD.3: 3 residues within 4Å: Chain A: H.47 Ligands: IOD.15, IOD.16 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.47 CD.4: 3 residues within 4Å: Chain A: E.46 Ligands: ACY.1, IOD.10 3 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:E.46, H2O.1, ACY.1

18 x IOD: IODIDE ION(Non-functional Binders)

IOD.5: 1 residues within 4Å: Ligands: IOD.6 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: K.52 Ligands: IOD.5 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Ligands: IOD.8, IOD.9 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain A: P.8, Y.9 Ligands: IOD.7 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: S.55 Ligands: IOD.7 Ligand excluded by PLIP IOD.10: 4 residues within 4Å: Chain A: R.14, E.46, S.48 Ligands: CD.4 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Ligands: IOD.12 Ligand excluded by PLIP IOD.12: 4 residues within 4Å: Chain A: E.64 Ligands: IOD.11, IOD.13, IOD.14 Ligand excluded by PLIP IOD.13: 1 residues within 4Å: Ligands: IOD.12 Ligand excluded by PLIP IOD.14: 1 residues within 4Å: Ligands: IOD.12 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain A: H.47 Ligands: CD.3 Ligand excluded by PLIP IOD.16: 4 residues within 4Å: Chain A: E.44, E.45, H.47 Ligands: CD.3 Ligand excluded by PLIP IOD.17: 1 residues within 4Å: Ligands: IOD.22 Ligand excluded by PLIP IOD.18: 1 residues within 4Å: Ligands: IOD.22 Ligand excluded by PLIP IOD.19: 2 residues within 4Å: Ligands: IOD.20, IOD.22 Ligand excluded by PLIP IOD.20: 3 residues within 4Å: Chain A: K.38 Ligands: IOD.19, IOD.22 Ligand excluded by PLIP IOD.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.22: 5 residues within 4Å: Chain A: E.35 Ligands: IOD.17, IOD.18, IOD.19, IOD.20 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, D. et al., Atomic resolution structure of the E. coli YajR transporter YAM domain. Biochem.Biophys.Res.Commun. (2014)

Release Date

2014-07-09

Peptides

Major facilitator superfamily MFS_1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Major facilitator superfamily MFS_1

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