SMTL ID : 4q34.1

Crystal structure of a putative esterase (BDI_1566) from Parabacteroides distasonis ATCC 8503 at 1.60 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: W.112, R.115, Q.177, W.262 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: K.131, R.132 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: N.114, R.256, E.258, L.259 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: W.112, R.115, Q.177, W.262 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: K.131, R.132 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: N.114, R.256, E.258, L.259 Ligand excluded by PLIP

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 11 residues within 4Å: Chain A: Y.35, F.37, E.63, N.93 Chain B: Y.35, F.37, S.59, E.63, Q.73, L.85 Ligands: GOL.12 10 PLIP interactions: 7 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.59, B:E.63, B:Q.73, B:Q.73, A:Y.35, A:N.93 Water bridges: B:F.37, B:N.93, B:N.93, A:S.59 GOL.5: 5 residues within 4Å: Chain A: D.108, V.111, W.112, R.115, E.258 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.108, A:R.115 GOL.6: 6 residues within 4Å: Chain A: L.186, T.189, R.190, N.191, I.192, K.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.192, A:I.192 Water bridges: A:L.186, A:T.189, A:E.236 GOL.7: 6 residues within 4Å: Chain A: D.138, R.142 Chain B: G.17, G.18, V.20, H.30 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.138, A:R.142 Water bridges: B:G.17 GOL.8: 5 residues within 4Å: Chain A: F.14, Y.38, K.40, Y.84, K.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.40, A:Y.84, A:K.166 Water bridges: A:S.13 GOL.12: 11 residues within 4Å: Chain A: Y.35, F.37, S.59, E.63, Q.73, L.85 Chain B: Y.35, F.37, E.63, N.93 Ligands: GOL.4 10 PLIP interactions: 2 interactions with chain B, 8 interactions with chain A Hydrogen bonds: B:N.93, A:Y.35, A:S.59, A:Q.73, A:Q.73 Water bridges: B:S.59, A:F.37, A:N.93, A:N.93, A:N.93 GOL.13: 5 residues within 4Å: Chain B: D.108, V.111, W.112, R.115, E.258 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.108, B:D.108, B:R.115 GOL.14: 6 residues within 4Å: Chain B: L.186, T.189, R.190, N.191, I.192, K.239 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.192, B:I.192 Water bridges: B:L.186, B:T.189 GOL.15: 6 residues within 4Å: Chain A: G.17, G.18, V.20, H.30 Chain B: D.138, R.142 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Water bridges: A:G.17, B:D.138 Hydrogen bonds: B:D.138, B:R.142 GOL.16: 5 residues within 4Å: Chain B: F.14, Y.38, K.40, Y.84, K.166 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.40, B:Y.84, B:Y.84, B:K.166 Water bridges: B:S.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative esterase (BDI_1566) from Parabacteroides distasonis ATCC 8503 at 1.60 A resolution. To be published

Release Date

2014-06-18

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uncharacterized protein