SMTL ID : 4q3k.1

Crystal structure of MGS-M1, an alpha/beta hydrolase enzyme from a Medee basin deep-sea metagenome library

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-tetramer

Ligands

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: D.191, L.192, V.221, H.222 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: D.191, L.192, V.221, H.222 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain C: D.191, L.192, V.221, H.222 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain D: D.191, L.192, V.221, H.222 Ligand excluded by PLIP

4 x F: FLUORIDE ION(Non-covalent)

F.2: 4 residues within 4Å: Chain A: G.63, G.64, S.134, A.135 No protein-ligand interaction detected (PLIP) F.5: 4 residues within 4Å: Chain B: G.63, G.64, S.134, A.135 No protein-ligand interaction detected (PLIP) F.9: 4 residues within 4Å: Chain C: G.63, G.64, S.134, A.135 No protein-ligand interaction detected (PLIP) F.12: 4 residues within 4Å: Chain D: G.63, G.64, S.134, A.135 No protein-ligand interaction detected (PLIP)

6 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 6 residues within 4Å: Chain A: Y.167, W.168, D.191, L.192, P.194, H.197 No protein-ligand interaction detected (PLIP) PGE.6: 6 residues within 4Å: Chain B: H.164, Y.167, W.168, L.192, P.194, H.197 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.191 PGE.7: 6 residues within 4Å: Chain B: G.64, Y.65, Q.66, K.95, A.98, F.170 No protein-ligand interaction detected (PLIP) PGE.10: 6 residues within 4Å: Chain C: Y.167, W.168, D.191, L.192, P.194, H.197 No protein-ligand interaction detected (PLIP) PGE.13: 6 residues within 4Å: Chain D: H.164, Y.167, W.168, L.192, P.194, H.197 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.191 PGE.14: 6 residues within 4Å: Chain D: G.64, Y.65, Q.66, K.95, A.98, F.170 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alcaide, M. et al., Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats. Environ Microbiol (2015)

Release Date

2015-02-25

Peptides

MGS-M1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

MGS-M1