SMTL ID : 4q4t.1

Structure of the Resuscitation Promoting Factor Interacting protein RipA mutated at E444

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 8 residues within 4Å: Chain A: H.432, T.434, M.442, A.444, P.446, R.453, A.455, R.458 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.432, A:R.453, A:R.458, A:R.458 FMT.2: 7 residues within 4Å: Chain A: S.276, D.382, C.383, S.384, H.432, V.433 Ligands: GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.276, A:D.382, A:C.383, A:S.384, A:V.433 Water bridges: A:S.384

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 9 residues within 4Å: Chain A: P.272, S.276, Y.358, W.360, D.382, Q.431, H.432, P.446 Ligands: FMT.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:P.272, A:Y.358 Water bridges: A:S.276, A:D.382, A:H.432, A:A.445 GOL.4: 9 residues within 4Å: Chain A: T.323, A.325, Q.331, G.332, R.333, I.334, Y.469, I.470, E.471 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.333, A:I.334, A:I.334, A:E.471 Water bridges: A:A.330, A:G.332

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Squeglia, F. et al., Mutational and structural study of RipA, a key enzyme in Mycobacterium tuberculosis cell division: evidence for the L-to-D inversion of configuration of the catalytic cysteine. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-09-10

Peptides

Peptidoglycan endopeptidase RipA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan endopeptidase RipA