SMTL ID : 4q5k.1

Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from Bacteroides uniformis ATCC 8492 at 1.30 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x 2YP: (2R)-2-[[(1R,2S,3R,4R,5R)-4-acetamido-2-[(2S,3R,4R,5S,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6,8-dioxabicyclo[3.2.1]octan-3-yl]oxy]propanoic acid(Non-covalent)

2YP.1: 16 residues within 4Å: Chain A: Y.19, L.24, D.40, C.41, T.42, T.43, R.87, H.89, Y.90, Y.122, M.123, Y.130, L.186, V.188, A.189, H.190 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:D.40, A:Y.90, A:Y.122, A:L.186 Hydrogen bonds: A:D.40, A:R.87, A:H.89, A:H.89, A:Y.130, A:A.189 Water bridges: A:H.22, A:C.41, A:Y.130, A:V.188 Salt bridges: A:H.190

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: T.181, N.182, T.183, L.186 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.186, A:L.186

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, Q. et al., Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family. Structure (2014)

Release Date

2014-05-21

Peptides

Uncharacterized protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uncharacterized protein

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