SMTL ID : 4q5m.1

D30N tethered HIV-1 protease dimer/saquinavir complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ROC: (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide(Non-covalent)

ROC.1: 25 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, N.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84, D.129, G.131, A.132, D.133, N.134, I.151, G.152, G.153, I.154, T.184, P.185, V.186, I.188 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:N.30, A:V.32, A:I.50, A:V.82, A:I.84, A:I.154, A:P.185, A:V.186, A:I.188 Hydrogen bonds: A:G.131, A:G.131, A:D.133, A:N.134, A:N.134, A:G.152, A:G.152 Water bridges: A:I.50, A:I.50 Salt bridges: A:D.25, A:D.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prashar, V. et al., Structural Basis of Why Nelfinavir-Resistant D30N Mutant of HIV-1 Protease Remains Susceptible to Saquinavir. Chem.Biol.Drug Des. (2015)

Release Date

2015-04-08

Peptides

Protease: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protease

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