SMTL ID : 4q5v.1 (1 other biounit)

Crystal structure of the catalytic core of human DNA polymerase alpha in ternary complex with an RNA-primed DNA template and aphidicolin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.52 Å

Oligo State

monomer

Ligands

1 x 2ZE: (3R,4R,4aR,6aS,8R,9R,11aS,11bS)-4,9-bis(hydroxymethyl)-4,11b-dimethyltetradecahydro-8,11a-methanocyclohepta[a]naphthale ne-3,9-diol(Non-covalent)

2ZE.1: 10 residues within 4Å: Chain A: L.529, Y.530, N.619, S.620, Y.622, G.623, D.669 Chain B: C.11 Chain C: G.10, G.11 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.530, A:Y.622, A:Y.622 Hydrogen bonds: A:L.529, A:Y.530, A:N.619, A:G.623 Water bridges: A:N.619

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baranovskiy, A.G. et al., Structural basis for inhibition of DNA replication by aphidicolin. Nucleic Acids Res. (2014)

Release Date

2014-11-26

Peptides

DNA polymerase alpha catalytic subunit: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase alpha catalytic subunit

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