SMTL ID : 4q62.1

Crystal Structure of Leucine-rich repeat- and Coiled coil-containing Protein from Legionella pneumophila

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

14 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: I.199, G.200, D.201, E.202 Chain B: K.248 11 PLIP interactions: 4 interactions with chain A, 7 interactions with chain B Hydrogen bonds: A:D.201, A:E.202 Water bridges: A:D.201, A:D.201, B:K.248, B:K.248, B:K.248, B:K.248, B:S.271, B:S.271 Salt bridges: B:K.248 SO4.2: 6 residues within 4Å: Chain A: S.121, A.122, S.123 Chain B: H.373, T.374, G.375 12 PLIP interactions: 8 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:S.121, A:A.122, A:S.123, A:S.123, B:H.373, B:G.375 Water bridges: A:N.150, A:N.150, A:N.150, A:N.150, B:H.373, B:T.374 SO4.3: 2 residues within 4Å: Chain A: K.249 Chain B: K.249 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Water bridges: A:D.201, A:G.225, B:K.248, B:K.248 Salt bridges: A:K.249, B:K.249 SO4.4: 6 residues within 4Å: Chain A: E.250, W.251, G.252, L.253, L.279 Ligands: EDO.17 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.251, A:G.252, A:L.253 Water bridges: A:D.254 SO4.5: 3 residues within 4Å: Chain A: R.299, A.300, K.352 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.299, A:K.352 SO4.6: 6 residues within 4Å: Chain A: D.289, L.290, N.291, N.313, L.314, D.315 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.290 Water bridges: A:N.291, A:N.291, A:N.313, A:L.314, A:S.368 SO4.7: 5 residues within 4Å: Chain A: T.377, S.378, R.417 Chain B: N.101 Ligands: EDO.12 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.378, B:N.101 Water bridges: A:T.377, A:R.379 Salt bridges: A:R.417 SO4.18: 5 residues within 4Å: Chain A: K.248 Chain B: I.199, G.200, D.201, E.202 9 PLIP interactions: 7 interactions with chain A, 2 interactions with chain B Water bridges: A:K.248, A:K.248, A:K.248, A:K.248, A:S.271, A:S.271 Salt bridges: A:K.248 Hydrogen bonds: B:D.201, B:E.202 SO4.19: 6 residues within 4Å: Chain A: H.373, T.374, G.375 Chain B: S.121, A.122, S.123 16 PLIP interactions: 8 interactions with chain B, 8 interactions with chain A Hydrogen bonds: B:S.121, B:A.122, B:S.123, B:S.123, A:H.373, A:G.375 Water bridges: B:N.150, B:N.150, B:N.150, B:N.150, A:H.373, A:H.373, A:H.373, A:H.373, A:H.373, A:T.374 SO4.20: 2 residues within 4Å: Chain A: K.249 Chain B: K.249 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Water bridges: B:G.225, A:K.248, A:K.248 Salt bridges: B:K.249, A:K.249 SO4.21: 6 residues within 4Å: Chain B: E.250, W.251, G.252, L.253, L.279 Ligands: EDO.34 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.250, B:W.251, B:G.252, B:L.253 Water bridges: B:D.254 SO4.22: 3 residues within 4Å: Chain B: R.299, A.300, K.352 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.299, B:K.352 SO4.23: 6 residues within 4Å: Chain B: D.289, L.290, N.291, N.313, L.314, D.315 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:L.290 Water bridges: B:N.291, B:N.291, B:N.313, B:L.314, B:S.368 SO4.24: 5 residues within 4Å: Chain A: N.101 Chain B: T.377, S.378, R.417 Ligands: EDO.29 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:N.101, B:S.378 Water bridges: B:T.377, B:R.379 Salt bridges: B:R.417

20 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 3 residues within 4Å: Chain A: N.370, K.397, G.400 Ligand excluded by PLIP EDO.9: 3 residues within 4Å: Chain A: H.176, Q.177, R.206 Ligand excluded by PLIP EDO.10: 2 residues within 4Å: Chain A: N.143, R.171 Ligand excluded by PLIP EDO.11: 2 residues within 4Å: Chain A: Y.116, R.142 Ligand excluded by PLIP EDO.12: 5 residues within 4Å: Chain A: K.324, K.350, T.377, R.379 Ligands: SO4.7 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: S.123, A.149, N.150, Y.153 Chain B: A.323, K.324 Ligand excluded by PLIP EDO.14: 5 residues within 4Å: Chain A: R.299, S.320, A.323, E.349 Chain B: A.149 Ligand excluded by PLIP EDO.15: 2 residues within 4Å: Chain A: T.57, N.60 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain A: K.76, D.77, K.100 Chain B: Q.413 Ligand excluded by PLIP EDO.17: 5 residues within 4Å: Chain A: N.273, N.275, H.276, L.279 Ligands: SO4.4 Ligand excluded by PLIP EDO.25: 3 residues within 4Å: Chain B: N.370, K.397, G.400 Ligand excluded by PLIP EDO.26: 3 residues within 4Å: Chain B: H.176, Q.177, R.206 Ligand excluded by PLIP EDO.27: 2 residues within 4Å: Chain B: N.143, R.171 Ligand excluded by PLIP EDO.28: 2 residues within 4Å: Chain B: Y.116, R.142 Ligand excluded by PLIP EDO.29: 5 residues within 4Å: Chain B: K.324, K.350, T.377, R.379 Ligands: SO4.24 Ligand excluded by PLIP EDO.30: 6 residues within 4Å: Chain A: A.323, K.324 Chain B: S.123, A.149, N.150, Y.153 Ligand excluded by PLIP EDO.31: 5 residues within 4Å: Chain A: A.149 Chain B: R.299, S.320, A.323, E.349 Ligand excluded by PLIP EDO.32: 2 residues within 4Å: Chain B: T.57, N.60 Ligand excluded by PLIP EDO.33: 4 residues within 4Å: Chain A: Q.413 Chain B: K.76, D.77, K.100 Ligand excluded by PLIP EDO.34: 5 residues within 4Å: Chain B: N.273, N.275, H.276, L.279 Ligands: SO4.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of Leucine-rich repeat- and Coiled coil-containing Protein from Legionella pneumophila. To be Published

Release Date

2014-05-07

Peptides

Leucine-rich repeat-and coiled coil-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Leucine-rich repeat-and coiled coil-containing protein