SMTL ID : 4q6t.1

The crystal structure of a class V chitininase from Pseudomonas fluorescens Pf-5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

3 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 2 residues within 4Å: Chain A: H.247, S.249 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.247, H2O.6, H2O.6, H2O.8, H2O.12 NI.2: 2 residues within 4Å: Chain A: E.257, H.258 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:H.258, H2O.6, H2O.13, H2O.14, H2O.14, H2O.15 NI.3: 1 residues within 4Å: Chain A: H.263 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.263, H2O.2, H2O.6, H2O.15, H2O.15

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: S.36, Y.76, W.322 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.36 Water bridges: A:S.36, A:S.36, A:S.74, A:E.78, A:E.78

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: D.170, A.173 Ligands: CD.6 Ligand excluded by PLIP

1 x CD: CADMIUM ION(Non-covalent)

CD.6: 4 residues within 4Å: Chain A: C.133, D.170, A.173 Ligands: CL.5 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.133, A:D.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a class V chitininase from Pseudomonas fluorescens Pf-5. To be Published

Release Date

2014-05-07

Peptides

Glycosyl hydrolase, family 18: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyl hydrolase, family 18