- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 4 residues within 4Å:- Chain A: S.32, P.34, Q.35, R.38
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.32, A:S.32, A:R.38, A:R.38
GOL.3: 6 residues within 4Å:- Chain A: A.299, D.300, P.301, K.304, H.334, R.336
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.334, A:R.336
- Water bridges: A:K.304
GOL.4: 7 residues within 4Å:- Chain A: Y.14, A.15, L.360, D.361, V.519, E.520, A.526
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.361, A:D.361, A:E.520
GOL.13: 4 residues within 4Å:- Chain C: S.32, P.34, Q.35, R.38
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.32, C:S.32, C:R.38, C:R.38
GOL.14: 6 residues within 4Å:- Chain C: A.299, D.300, P.301, K.304, H.334, R.336
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:H.334, C:R.336
- Water bridges: C:K.304
GOL.15: 7 residues within 4Å:- Chain C: Y.14, A.15, L.360, D.361, V.519, E.520, A.526
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.361, C:D.361, C:E.520
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 2 residues within 4Å:- Chain A: R.477
- Chain C: R.477
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Salt bridges: A:R.477, C:R.477
SO4.6: 3 residues within 4Å:- Chain A: R.368, K.369, A.370
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.370
- Water bridges: A:K.369, A:K.369
- Salt bridges: A:R.368
SO4.7: 7 residues within 4Å:- Chain A: F.661, R.793, S.795, I.947, G.948, A.949, F.956
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:S.795, A:S.795, A:G.948, A:A.949
- Salt bridges: A:R.793
SO4.9: 7 residues within 4Å:- Chain B: F.661, R.793, S.795, I.947, G.948, A.949, F.956
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:S.795, B:G.948, B:A.949
- Salt bridges: B:R.793
SO4.10: 3 residues within 4Å:- Chain B: R.477
- Chain D: R.477
- Ligands: SO4.21
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Salt bridges: B:R.477, D:R.477
SO4.11: 3 residues within 4Å:- Chain B: R.368, K.369, A.370
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:A.370
- Water bridges: B:K.369, B:K.369
- Salt bridges: B:R.368
SO4.16: 2 residues within 4Å:- Chain A: R.477
- Chain C: R.477
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain C- Salt bridges: A:R.477, C:R.477
SO4.17: 3 residues within 4Å:- Chain C: R.368, K.369, A.370
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:A.370
- Water bridges: C:K.369, C:K.369
- Salt bridges: C:R.368
SO4.18: 7 residues within 4Å:- Chain C: F.661, R.793, S.795, I.947, G.948, A.949, F.956
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:S.795, C:S.795, C:G.948, C:A.949
- Salt bridges: C:R.793
SO4.20: 7 residues within 4Å:- Chain D: F.661, R.793, S.795, I.947, G.948, A.949, F.956
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:S.795, D:G.948, D:A.949
- Salt bridges: D:R.793
SO4.21: 3 residues within 4Å:- Chain B: R.477
- Chain D: R.477
- Ligands: SO4.10
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain D- Salt bridges: B:R.477, D:R.477
SO4.22: 3 residues within 4Å:- Chain D: R.368, K.369, A.370
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:A.370
- Water bridges: D:K.369, D:K.369
- Salt bridges: D:R.368
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Arentson, B.W. et al., Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A. Biochemistry (2014)
- Release Date
- 2014-08-06
- Peptides
- Proline dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Arentson, B.W. et al., Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A. Biochemistry (2014)
- Release Date
- 2014-08-06
- Peptides
- Proline dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B