- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 16 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 8 residues within 4Å:- Chain A: F.661, R.793, C.794, S.795, I.947, G.948, A.949, F.956
Ligand excluded by PLIPSO4.3: 2 residues within 4Å:- Chain A: G.572, R.626
Ligand excluded by PLIPSO4.4: 3 residues within 4Å:- Chain A: R.368, K.369, A.370
Ligand excluded by PLIPSO4.5: 3 residues within 4Å:- Chain A: L.584, S.587, R.588
Ligand excluded by PLIPSO4.9: 7 residues within 4Å:- Chain B: F.661, R.793, S.795, I.947, G.948, A.949, F.956
Ligand excluded by PLIPSO4.10: 2 residues within 4Å:- Chain B: G.572, R.626
Ligand excluded by PLIPSO4.11: 3 residues within 4Å:- Chain B: R.368, K.369, A.370
Ligand excluded by PLIPSO4.12: 3 residues within 4Å:- Chain B: L.584, S.587, R.588
Ligand excluded by PLIPSO4.16: 8 residues within 4Å:- Chain C: F.661, R.793, C.794, S.795, I.947, G.948, A.949, F.956
Ligand excluded by PLIPSO4.17: 2 residues within 4Å:- Chain C: G.572, R.626
Ligand excluded by PLIPSO4.18: 3 residues within 4Å:- Chain C: R.368, K.369, A.370
Ligand excluded by PLIPSO4.19: 3 residues within 4Å:- Chain C: L.584, S.587, R.588
Ligand excluded by PLIPSO4.23: 7 residues within 4Å:- Chain D: F.661, R.793, S.795, I.947, G.948, A.949, F.956
Ligand excluded by PLIPSO4.24: 2 residues within 4Å:- Chain D: G.572, R.626
Ligand excluded by PLIPSO4.25: 3 residues within 4Å:- Chain D: R.368, K.369, A.370
Ligand excluded by PLIPSO4.26: 3 residues within 4Å:- Chain D: L.584, S.587, R.588
Ligand excluded by PLIP- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 7 residues within 4Å:- Chain A: Y.14, A.15, L.360, D.361, V.519, E.520, A.526
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.361, A:E.520
GOL.7: 5 residues within 4Å:- Chain A: R.358, V.519, E.520, F.521, D.605
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.358, A:V.519, A:F.521, A:D.605
GOL.13: 6 residues within 4Å:- Chain B: Y.14, L.360, D.361, V.519, E.520, A.526
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.361, B:E.520
GOL.14: 4 residues within 4Å:- Chain B: R.358, V.519, E.520, F.521
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.520, B:F.521
GOL.20: 7 residues within 4Å:- Chain C: Y.14, A.15, L.360, D.361, V.519, E.520, A.526
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.361, C:E.520
GOL.21: 5 residues within 4Å:- Chain C: R.358, V.519, E.520, F.521, D.605
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.358, C:V.519, C:F.521, C:D.605
GOL.27: 6 residues within 4Å:- Chain D: Y.14, L.360, D.361, V.519, E.520, A.526
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.361, D:E.520
GOL.28: 4 residues within 4Å:- Chain D: R.358, V.519, E.520, F.521
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.520, D:F.521
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Arentson, B.W. et al., Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A. Biochemistry (2014)
- Release Date
- 2014-08-06
- Peptides
- Proline dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Arentson, B.W. et al., Kinetic and Structural Characterization of Tunnel-Perturbing Mutants in Bradyrhizobium japonicum Proline Utilization A. Biochemistry (2014)
- Release Date
- 2014-08-06
- Peptides
- Proline dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B