SMTL ID : 4q9v.1

Crystal structure of TIPE3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: S.161, L.162 Ligand excluded by PLIP CL.2: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: S.80, Q.81 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: T.136, R.138 Ligand excluded by PLIP

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: Y.43, K.47, K.53 Chain B: V.3, F.4 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.43, B:F.4 Salt bridges: A:K.47, A:K.53 SO4.6: 5 residues within 4Å: Chain A: K.65, T.136, R.138, T.139, R.142 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.136, A:R.138, A:T.139 Water bridges: A:T.136, A:R.142 Salt bridges: A:K.65, A:R.142 SO4.7: 2 residues within 4Å: Chain A: R.113, N.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.114 Salt bridges: A:R.113 SO4.8: 2 residues within 4Å: Chain A: Y.105, R.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.105 Water bridges: A:R.167 Salt bridges: A:R.167 SO4.9: 3 residues within 4Å: Chain A: L.73, Q.78, H.134 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.69, A:K.69 Salt bridges: A:H.134 SO4.10: 3 residues within 4Å: Chain A: P.168, N.169, R.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.169 Salt bridges: A:R.172 SO4.12: 2 residues within 4Å: Chain B: Y.105, R.167 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.167 SO4.13: 4 residues within 4Å: Chain A: F.4 Chain B: Y.43, K.47, K.53 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:F.4, A:F.4 Salt bridges: B:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fayngerts, S.A. et al., TIPE3 Is the Transfer Protein of Lipid Second Messengers that Promote Cancer. Cancer Cell (2014)

Release Date

2014-10-22

Peptides

Tumor necrosis factor alpha-induced protein 8-like protein 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tumor necrosis factor alpha-induced protein 8-like protein 3