- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
ZN.3: 4 residues within 4Å:- Chain A: D.178, H.180, D.267
- Ligands: SHH.4
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.178, A:H.180, A:D.267
ZN.7: 4 residues within 4Å:- Chain B: D.178, H.180, D.267
- Ligands: SHH.8
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:D.178, B:H.180, B:D.267
- 2 x SHH: OCTANEDIOIC ACID HYDROXYAMIDE PHENYLAMIDE(Non-covalent)
SHH.4: 17 residues within 4Å:- Chain A: Y.100, H.142, H.143, G.151, F.152, D.178, H.180, F.208, D.267, M.274, G.304, Y.306
- Chain B: P.273, M.274, Y.306
- Ligands: ZN.3, SHH.8
10 PLIP interactions:3 interactions with chain B, 7 interactions with chain A- Hydrophobic interactions: B:P.273, B:Y.306, B:Y.306, A:F.152, A:F.152, A:F.208, A:F.208, A:F.208
- Hydrogen bonds: A:H.143, A:Y.306
SHH.8: 16 residues within 4Å:- Chain A: P.273, Y.306
- Chain B: Y.100, H.142, H.143, G.151, F.152, D.178, H.180, F.208, D.267, M.274, G.304, Y.306
- Ligands: SHH.4, ZN.7
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:P.273, A:Y.306, B:F.152, B:F.152, B:F.152, B:F.208
- Hydrogen bonds: B:H.143
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Decroos, C. et al., Compromised Structure and Function of HDAC8 Mutants Identified in Cornelia de Lange Syndrome Spectrum Disorders. Acs Chem.Biol. (2014)
- Release Date
- 2014-08-06
- Peptides
- Histone deacetylase 8: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.38 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 2 x SHH: OCTANEDIOIC ACID HYDROXYAMIDE PHENYLAMIDE(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Decroos, C. et al., Compromised Structure and Function of HDAC8 Mutants Identified in Cornelia de Lange Syndrome Spectrum Disorders. Acs Chem.Biol. (2014)
- Release Date
- 2014-08-06
- Peptides
- Histone deacetylase 8: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B