SMTL ID : 4qa9.1

Ensemble refinement of an epoxide hydrolase from Streptomyces carzinostaticus subsp. neocarzinostaticus.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-dimer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.2: 6 residues within 4Å: Chain A: S.1, E.74, I.75, D.76, G.77, K.161 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.1, A:D.76 Salt bridges: A:K.161 SO4.3: 2 residues within 4Å: Chain A: P.12, Q.13 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Q.13, A:Q.13, A:Q.13 SO4.4: 3 residues within 4Å: Chain A: R.64, Q.67, Y.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.68 Salt bridges: A:R.64 SO4.17: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.18: 6 residues within 4Å: Chain B: S.1, E.74, I.75, D.76, G.77, K.161 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.1, B:D.76, B:D.76 Salt bridges: B:K.161 SO4.19: 2 residues within 4Å: Chain B: P.12, Q.13 3 PLIP interactions: 3 interactions with chain B Water bridges: B:Q.13, B:Q.13, B:Q.13 SO4.20: 3 residues within 4Å: Chain B: R.64, Q.67, Y.68 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.68 Salt bridges: B:R.64

24 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 11 residues within 4Å: Chain A: L.202, Q.203, T.204, N.205, S.322, L.345, A.346, R.348, D.349, F.350 Ligands: EDO.8 Ligand excluded by PLIP EDO.6: 9 residues within 4Å: Chain A: D.177, F.230, M.238, W.270, P.314, L.338, F.339, H.364 Ligands: EDO.11 Ligand excluded by PLIP EDO.7: 10 residues within 4Å: Chain A: L.152, F.181, L.184, L.185, F.312, S.322, P.323, F.350 Ligands: EDO.8, EDO.10 Ligand excluded by PLIP EDO.8: 10 residues within 4Å: Chain A: L.184, L.202, Q.203, T.204, N.205, S.322, F.350 Ligands: EDO.5, EDO.7, EDO.10 Ligand excluded by PLIP EDO.9: 4 residues within 4Å: Chain A: G.153, L.185, A.188, I.189 Ligand excluded by PLIP EDO.10: 9 residues within 4Å: Chain A: D.177, A.180, F.181, L.184, L.202, Q.203 Ligands: EDO.7, EDO.8, EDO.11 Ligand excluded by PLIP EDO.11: 9 residues within 4Å: Chain A: D.177, I.178, F.181, M.238, L.309, L.313, P.314 Ligands: EDO.6, EDO.10 Ligand excluded by PLIP EDO.12: 9 residues within 4Å: Chain A: I.16, L.19, K.20, L.23, W.52, R.53, F.56, W.58, F.295 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: A.61, R.64, L.109, D.284, L.285, T.288 Ligand excluded by PLIP EDO.14: 11 residues within 4Å: Chain A: L.136, P.137, F.139, L.145, W.150, E.151, I.155, Q.304, A.305, E.308, L.309 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain A: K.310, P.311, T.316, S.317 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain A: G.167, E.169 Ligand excluded by PLIP EDO.21: 11 residues within 4Å: Chain B: L.202, Q.203, T.204, N.205, S.322, L.345, A.346, R.348, D.349, F.350 Ligands: EDO.24 Ligand excluded by PLIP EDO.22: 9 residues within 4Å: Chain B: D.177, F.230, M.238, W.270, P.314, L.338, F.339, H.364 Ligands: EDO.27 Ligand excluded by PLIP EDO.23: 10 residues within 4Å: Chain B: L.152, F.181, L.184, L.185, F.312, S.322, P.323, F.350 Ligands: EDO.24, EDO.26 Ligand excluded by PLIP EDO.24: 10 residues within 4Å: Chain B: L.184, L.202, Q.203, T.204, N.205, S.322, F.350 Ligands: EDO.21, EDO.23, EDO.26 Ligand excluded by PLIP EDO.25: 4 residues within 4Å: Chain B: G.153, L.185, A.188, I.189 Ligand excluded by PLIP EDO.26: 9 residues within 4Å: Chain B: D.177, A.180, F.181, L.184, L.202, Q.203 Ligands: EDO.23, EDO.24, EDO.27 Ligand excluded by PLIP EDO.27: 9 residues within 4Å: Chain B: D.177, I.178, F.181, M.238, L.309, L.313, P.314 Ligands: EDO.22, EDO.26 Ligand excluded by PLIP EDO.28: 9 residues within 4Å: Chain B: I.16, L.19, K.20, L.23, W.52, R.53, F.56, W.58, F.295 Ligand excluded by PLIP EDO.29: 6 residues within 4Å: Chain B: A.61, R.64, L.109, D.284, L.285, T.288 Ligand excluded by PLIP EDO.30: 11 residues within 4Å: Chain B: L.136, P.137, F.139, L.145, W.150, E.151, I.155, Q.304, A.305, E.308, L.309 Ligand excluded by PLIP EDO.31: 4 residues within 4Å: Chain B: K.310, P.311, T.316, S.317 Ligand excluded by PLIP EDO.32: 2 residues within 4Å: Chain B: G.167, E.169 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Ensemble refinement of an epoxide hydrolase from Streptomyces carzinostaticus subsp. neocarzinostaticus. To be Published

Release Date

2014-05-21

Peptides

Epoxide hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Epoxide hydrolase

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