- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x KK1: 6-(4-methoxyphenyl)-N~4~-octylpyrimidine-2,4-diamine(Non-covalent)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.2: 2 residues within 4Å:- Chain A: N.74, S.76
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.74, A:S.76
NAG.7: 2 residues within 4Å:- Chain B: N.74, S.76
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.74, B:S.76
NAG.10: 3 residues within 4Å:- Chain C: N.74, S.76, H.77
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:S.76
NAG.15: 3 residues within 4Å:- Chain D: N.74, S.76, H.77
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:N.74, D:S.76, D:H.77
NAG.19: 2 residues within 4Å:- Chain E: N.74, S.76
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.74, E:S.76
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.3: 7 residues within 4Å:- Chain A: D.25, V.26, I.27, H.153
- Chain B: R.11, V.82, S.83
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:I.27, B:S.83, B:S.83
- Salt bridges: A:H.153, B:R.11
PO4.4: 7 residues within 4Å:- Chain A: R.11, V.82, S.83
- Chain E: D.25, V.26, I.27, H.153
7 PLIP interactions:4 interactions with chain E, 3 interactions with chain A- Hydrogen bonds: E:D.25, E:D.25, E:I.27, A:S.83, A:S.83
- Salt bridges: E:H.153, A:R.11
PO4.5: 4 residues within 4Å:- Chain A: V.49, N.50, E.51, I.52
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.49, A:V.49, A:E.51
PO4.8: 5 residues within 4Å:- Chain B: I.14, N.17, W.73, N.74, S.78
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.10, B:N.17, B:S.78
- Water bridges: B:N.74
PO4.11: 8 residues within 4Å:- Chain B: D.25, V.26, I.27, H.153
- Chain C: R.11, L.15, V.82, S.83
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:I.27, C:S.83
- Salt bridges: B:H.153, C:R.11
PO4.12: 7 residues within 4Å:- Chain C: D.25, V.26, I.27, H.153
- Chain D: R.11, V.82, S.83
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:D.25, C:D.25, C:I.27, D:S.83
- Salt bridges: C:H.153, D:R.11
PO4.13: 6 residues within 4Å:- Chain C: V.49, V.136, D.137, R.178, F.179, K.211
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:V.49, C:D.137
- Salt bridges: C:R.178
PO4.16: 2 residues within 4Å:- Chain D: V.49, R.178
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.178
- Water bridges: D:V.49, D:V.49
PO4.17: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)PO4.20: 7 residues within 4Å:- Chain D: D.25, V.26, I.27, H.153
- Chain E: R.11, V.82, S.83
6 PLIP interactions:4 interactions with chain D, 2 interactions with chain E- Hydrogen bonds: D:D.25, D:D.25, D:I.27, E:S.83
- Salt bridges: D:H.153, E:R.11
PO4.21: 3 residues within 4Å:- Chain E: E.48, D.57, R.128
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:D.57
- Salt bridges: E:R.128
PO4.22: 6 residues within 4Å:- Chain D: S.194
- Chain E: K.42, S.167, D.169, E.171, Y.172
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain E- Hydrogen bonds: D:S.194, D:S.194, E:S.167, E:Y.172
- Salt bridges: E:K.42
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaczanowska, K. et al., Structural basis for cooperative interactions of substituted 2-aminopyrimidines with the acetylcholine binding protein. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-07-16
- Peptides
- Acetylcholine-binding protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- homo-pentamer
- Ligands
- 5 x KK1: 6-(4-methoxyphenyl)-N~4~-octylpyrimidine-2,4-diamine(Non-covalent)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 12 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kaczanowska, K. et al., Structural basis for cooperative interactions of substituted 2-aminopyrimidines with the acetylcholine binding protein. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-07-16
- Peptides
- Acetylcholine-binding protein: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E