SMTL ID : 4qb9.1

Crystal structure of Mycobacterium smegmatis Eis in complex with paromomycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

homo-hexamer

Ligands

6 x PAR: PAROMOMYCIN(Non-covalent)

PAR.1: 15 residues within 4Å: Chain A: F.46, S.103, F.104, V.105, T.139, A.140, S.141, E.157, V.257, D.310, D.311, Y.420, G.421, F.422 Ligands: SO4.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:F.104, A:V.105, A:T.139, A:A.140, A:A.140, A:E.157, A:V.257, A:D.310, A:G.421, A:G.421 PAR.3: 16 residues within 4Å: Chain B: F.46, I.102, S.103, F.104, V.105, T.139, A.140, S.141, E.157, R.225, D.310, D.311, Y.420, G.421, F.422 Ligands: SO4.4 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:I.102, B:F.104, B:V.105, B:S.141, B:E.157, B:D.310, B:G.421, B:F.422 PAR.5: 15 residues within 4Å: Chain C: F.46, S.103, F.104, V.105, T.139, A.140, S.141, Y.146, E.157, D.310, D.311, Y.420, G.421, F.422 Ligands: SO4.6 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:F.104, C:V.105, C:T.139, C:A.140, C:A.140, C:Y.146, C:Y.146, C:E.157, C:D.310, C:G.421 PAR.7: 13 residues within 4Å: Chain D: F.46, S.103, F.104, T.139, A.140, S.141, E.157, D.310, D.311, Y.420, G.421, F.422 Ligands: SO4.8 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:E.50, D:S.103, D:F.104, D:T.139, D:A.140, D:S.141, D:S.141, D:E.157, D:D.310, D:G.421 PAR.9: 17 residues within 4Å: Chain E: F.46, I.102, S.103, F.104, V.105, L.138, T.139, A.140, S.141, Y.146, E.157, D.310, D.311, Y.420, G.421, F.422 Ligands: SO4.10 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:S.103, E:F.104, E:V.105, E:T.139, E:T.139, E:T.139, E:A.140, E:A.140, E:E.157, E:D.310, E:G.421 PAR.11: 16 residues within 4Å: Chain F: F.46, I.102, S.103, F.104, T.139, A.140, S.141, Y.146, E.157, E.258, D.310, D.311, Y.420, G.421, F.422 Ligands: SO4.12 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:I.102, F:F.104, F:T.139, F:A.140, F:A.140, F:Y.146, F:Y.146, F:E.157, F:E.258, F:D.310, F:G.421

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 7 residues within 4Å: Chain A: E.157, G.286, D.311, E.417, L.418, G.419 Ligands: PAR.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.286, A:E.417, A:L.418 SO4.4: 6 residues within 4Å: Chain B: E.157, G.286, E.417, L.418, G.419 Ligands: PAR.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.157, B:E.417, B:L.418 SO4.6: 9 residues within 4Å: Chain C: E.157, V.257, E.258, G.286, D.311, E.417, L.418, G.419 Ligands: PAR.5 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:E.157, C:E.258, C:E.258, C:E.417 SO4.8: 7 residues within 4Å: Chain D: E.157, V.257, G.286, E.417, L.418, G.419 Ligands: PAR.7 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:G.286, D:E.417, D:L.418 SO4.10: 6 residues within 4Å: Chain E: E.157, V.257, G.286, E.417, G.419 Ligands: PAR.9 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:E.157, E:E.157, E:E.417 SO4.12: 6 residues within 4Å: Chain F: E.157, E.258, G.286, E.417, L.418 Ligands: PAR.11 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:E.157, F:D.311

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, K.H. et al., Structure of Mycobacterium smegmatis Eis in complex with paromomycin. Acta Crystallogr.,Sect.F (2014)

Release Date

2015-04-01

Peptides

Enhanced intracellular survival protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Enhanced intracellular survival protein

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