SMTL ID : 4qbj.1

Crystal structure of N-myristoyl transferase from Aspergillus fumigatus complexed with a synthetic inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.353 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.353 Salt bridges: A:K.353 SO4.2: 2 residues within 4Å: Chain A: R.86, R.91 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.86, A:R.91 SO4.3: 4 residues within 4Å: Chain A: P.186, S.189, R.193, Q.194 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.189, A:S.189, A:Q.194

1 x NHM: S-(2-OXO)PENTADECYLCOA(Non-covalent)

NHM.4: 32 residues within 4Å: Chain A: H.50, Y.51, V.52, E.53, V.114, I.116, N.117, F.118, L.119, C.120, I.121, R.126, S.127, K.128, R.129, L.130, T.131, P.132, I.135, I.138, T.139, C.142, Y.143, I.147, Y.148, Q.149, A.150, Y.152, T.153, A.154, L.158, Y.366 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:Y.51, A:V.114, A:I.116, A:I.116, A:L.119, A:L.119, A:L.119, A:I.121, A:I.135, A:I.138, A:Y.143, A:A.150, A:Y.152, A:Y.152, A:Y.366, A:Y.366 Hydrogen bonds: A:L.119, A:L.119, A:I.121, A:R.126, A:S.127, A:R.129, A:L.130, A:T.131, A:T.131 Water bridges: A:K.128, A:K.128

1 x 2XQ: 3-[[3-methyl-2-[[2,3,4-tris(fluoranyl)phenoxy]methyl]-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine(Non-covalent)

2XQ.5: 19 residues within 4Å: Chain A: Y.51, F.61, Y.63, F.118, Y.167, Y.168, H.169, L.177, F.182, L.280, S.282, V.293, A.295, Y.297, V.336, N.338, A.339, L.340, L.396 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.61, A:F.118, A:Y.167, A:F.182, A:L.280, A:N.338, A:L.340 Hydrogen bonds: A:L.396 pi-Stacking: A:F.61, A:Y.167, A:Y.167, A:Y.297 Halogen bonds: A:S.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimada, T. et al., Structure of N-myristoyltransferase from Aspergillus fumigatus. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-04-01

Peptides

Glycylpeptide N-tetradecanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase