SMTL ID : 4qdh.2 (1 other biounit)

Crystal Structure of the C-terminal Domain of Mouse TLR9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: Q.97, A.98, N.100, Q.103 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.97, A:N.100, A:Q.103 NAG.2: 5 residues within 4Å: Chain A: W.125, N.154, S.156, S.179 Ligands: SO4.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.125, A:N.154, A:N.154, A:S.156 NAG.3: 5 residues within 4Å: Chain A: P.232, F.254, N.256, T.258, N.281 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.254 NAG.4: 3 residues within 4Å: Chain A: F.254, T.280, N.281 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.254 Hydrogen bonds: A:N.281 NAG.5: 8 residues within 4Å: Chain A: R.248, S.296, S.297, N.318, S.320, H.321, E.341, W.367 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.367 Hydrogen bonds: A:R.248, A:S.296, A:S.297, A:N.318

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: S.179, S.180, H.181 Ligands: NAG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.180, A:H.181 SO4.7: 4 residues within 4Å: Chain A: Y.123, H.124, W.125, N.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.125 Salt bridges: A:H.124 SO4.8: 2 residues within 4Å: Chain A: S.94, K.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.94 Salt bridges: A:K.119 SO4.9: 2 residues within 4Å: Chain A: H.171, G.194 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.194 Salt bridges: A:H.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, B. et al., Crystal structure of the C-terminal domain of mouse TLR9. Proteins (2014)

Release Date

2014-06-11

Peptides

Variable lymphocyte receptor B, Toll-like receptor 9 chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Variable lymphocyte receptor B, Toll-like receptor 9 chimera

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