SMTL ID : 4qdn.2 (1 other biounit)

Crystal Structure of the endo-beta-N-acetylglucosaminidase from Thermotoga maritima

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: I.49, A.87, I.90 No protein-ligand interaction detected (PLIP) PO4.3: 3 residues within 4Å: Chain B: I.49, A.87, I.90 No protein-ligand interaction detected (PLIP)

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 7 residues within 4Å: Chain A: E.34, F.47, G.48, I.49, L.91, Y.118, A.119 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.91, A:Y.118, A:A.119 MPD.4: 7 residues within 4Å: Chain B: E.34, F.47, G.48, I.49, L.91, Y.118, A.119 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.91, B:Y.118, B:A.119 Water bridges: B:Y.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lipski, A. et al., Structural and biochemical characterization of the beta-N-acetylglucosaminidase from Thermotoga maritima: Toward rationalization of mechanistic knowledge in the GH73 family. Glycobiology (2015)

Release Date

2014-11-12

Peptides

Flagellar protein FlgJ [peptidoglycan hydrolase]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Flagellar protein FlgJ [peptidoglycan hydrolase]

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