SMTL ID : 4qdq.2 (1 other biounit)

Physical basis for Nrp2 ligand binding

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: N.83, G.84, H.144, S.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.84, A:S.145, A:S.145 GOL.3: 4 residues within 4Å: Chain B: N.83, G.84, H.144, S.145 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.84, B:S.145, B:S.145

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: W.101, M.102, V.103, R.105, H.283 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.101, A:V.103 Salt bridges: A:R.105, A:H.283 SO4.4: 5 residues within 4Å: Chain B: W.101, M.102, V.103, R.105, H.283 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.101, B:V.103 Salt bridges: B:R.105, B:H.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, M.W. et al., Structural Basis for VEGF-C Binding to Neuropilin-2 and Sequestration by a Soluble Splice Form. Structure (2015)

Release Date

2015-04-15

Peptides

Neuropilin-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Neuropilin-2

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