SMTL ID : 4qdy.1

Crystal structure of a YbbR-like protein (SP_1560) from Streptococcus pneumoniae TIGR4 at 2.74 A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

homo-dimer

Ligands

4 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: G.31, F.32, A.33 Chain B: V.179, L.180, P.181, A.182 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.31 PEG.2: 3 residues within 4Å: Chain A: N.23, K.26, Y.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.23 PEG.4: 7 residues within 4Å: Chain A: V.179, L.180, P.181, A.182 Chain B: G.31, F.32, A.33 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.31 PEG.5: 3 residues within 4Å: Chain B: N.23, K.26, Y.27 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.23

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: Y.9, R.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.9 Salt bridges: A:R.45 SO4.6: 2 residues within 4Å: Chain B: Y.9, R.45 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.9 Salt bridges: B:R.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a conserved hypothetical protein (SP_1560) from Streptococcus pneumoniae TIGR4 at 2.74 A resolution. To be published

Release Date

2014-07-30

Peptides

conserved hypothetical protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

conserved hypothetical protein