SMTL ID : 4qed.2 (2 other biounits)

ElxO Y152F with NADPH Bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: G.9, G.10, K.12, G.13, I.14, S.33, R.34, Y.35, K.38, L.58, D.59, V.60, N.86, A.87, G.88, T.110, I.137, S.138, S.139, F.152, K.156, P.182, G.183, I.184, I.185, T.187 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:P.182 Hydrogen bonds: A:G.10, A:I.14, A:R.34, A:D.59, A:V.60, A:N.86, A:G.88, A:K.156, A:I.185, A:I.185 Water bridges: A:F.11, A:K.12, A:K.12, A:K.12, A:G.13, A:G.15, A:R.34, A:R.34, A:K.38, A:N.86, A:N.86, A:T.110, A:T.187, A:T.189 Salt bridges: A:K.12, A:R.34, A:K.38 pi-Cation interactions: A:R.34 NAP.4: 27 residues within 4Å: Chain B: G.9, G.10, K.12, G.13, I.14, S.33, R.34, Y.35, K.38, L.58, D.59, V.60, T.61, N.86, A.87, G.88, T.110, I.137, S.138, S.139, F.152, K.156, P.182, G.183, I.184, I.185, T.187 27 PLIP interactions: 27 interactions with chain B Hydrogen bonds: B:G.10, B:I.14, B:R.34, B:D.59, B:D.59, B:V.60, B:N.86, B:G.88, B:K.156, B:I.185, B:I.185 Water bridges: B:F.11, B:K.12, B:K.12, B:G.15, B:R.34, B:K.38, B:N.86, B:N.86, B:I.89, B:T.187, B:T.187, B:T.189 Salt bridges: B:K.12, B:R.34, B:K.38 pi-Cation interactions: B:R.34 NAP.6: 26 residues within 4Å: Chain C: G.9, G.10, K.12, G.13, I.14, S.33, R.34, Y.35, K.38, L.58, D.59, V.60, N.86, A.87, G.88, T.110, I.137, S.138, S.139, F.152, K.156, P.182, G.183, I.184, I.185, T.187 30 PLIP interactions: 30 interactions with chain C Hydrophobic interactions: C:P.182 Hydrogen bonds: C:G.10, C:I.14, C:R.34, C:D.59, C:V.60, C:N.86, C:G.88, C:K.156, C:I.185, C:I.185 Water bridges: C:F.11, C:K.12, C:K.12, C:K.12, C:G.15, C:R.34, C:R.34, C:K.38, C:N.86, C:N.86, C:T.187, C:T.187, C:T.187, C:T.187, C:T.189 Salt bridges: C:K.12, C:R.34, C:K.38 pi-Cation interactions: C:R.34 NAP.9: 27 residues within 4Å: Chain D: G.9, G.10, K.12, G.13, I.14, S.33, R.34, Y.35, K.38, L.58, D.59, V.60, T.61, N.86, A.87, G.88, T.110, I.137, S.138, S.139, F.152, K.156, P.182, G.183, I.184, I.185, T.187 26 PLIP interactions: 26 interactions with chain D Hydrogen bonds: D:G.10, D:I.14, D:R.34, D:D.59, D:V.60, D:N.86, D:G.88, D:K.156, D:I.185, D:I.185 Water bridges: D:F.11, D:K.12, D:K.12, D:G.13, D:G.15, D:R.34, D:K.38, D:N.86, D:N.86, D:I.89, D:T.110, D:T.187 Salt bridges: D:K.12, D:R.34, D:K.38 pi-Cation interactions: D:R.34

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.12, K.38, R.41 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.12, A:K.38, A:K.38 Salt bridges: A:K.12, A:K.38, A:R.41 SO4.3: 3 residues within 4Å: Chain B: R.34, I.89, L.91 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.34 Salt bridges: B:R.34 SO4.5: 3 residues within 4Å: Chain B: K.12, K.38, R.41 7 PLIP interactions: 7 interactions with chain B Water bridges: B:K.38, B:K.38, B:K.38, B:K.38 Salt bridges: B:K.12, B:K.38, B:R.41 SO4.7: 3 residues within 4Å: Chain C: K.12, K.38, R.41 6 PLIP interactions: 6 interactions with chain C Water bridges: C:K.12, C:K.38, C:K.38 Salt bridges: C:K.12, C:K.38, C:R.41 SO4.8: 3 residues within 4Å: Chain D: R.34, I.89, L.91 2 PLIP interactions: 2 interactions with chain D Water bridges: D:R.34 Salt bridges: D:R.34 SO4.10: 3 residues within 4Å: Chain D: K.12, K.38, R.41 7 PLIP interactions: 7 interactions with chain D Water bridges: D:K.38, D:K.38, D:K.38, D:K.38 Salt bridges: D:K.12, D:K.38, D:R.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ortega, M.A. et al., Substrate Specificity of the Lanthipeptide Peptidase ElxP and the Oxidoreductase ElxO. Acs Chem.Biol. (2014)

Release Date

2014-07-02

Peptides

ElxO: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

ElxO

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