SMTL ID : 4qei.1

Two distinct conformational states of GlyRS captured in crystal lattice

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

homo-dimer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain A: R.214, E.216, L.223, I.224, R.225, V.226, F.229, M.231, E.340, I.341, V.342, G.343, S.461, G.463, R.466 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:E.216, A:V.226, A:V.226, A:E.340, A:E.340, A:G.463, A:R.466 Water bridges: A:E.182, A:S.461 Salt bridges: A:R.214 pi-Stacking: A:F.229, A:F.229 pi-Cation interactions: A:R.466, A:R.466 AMP.2: 15 residues within 4Å: Chain C: R.214, E.216, L.223, I.224, R.225, V.226, F.229, M.231, E.340, I.341, V.342, G.343, S.461, G.463, R.466 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:E.216, C:V.226, C:V.226, C:E.340, C:E.340, C:G.463, C:R.466 Water bridges: C:E.182, C:S.461 Salt bridges: C:R.214 pi-Stacking: C:F.229, C:F.229 pi-Cation interactions: C:R.466, C:R.466

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, X. et al., Large Conformational Changes of Insertion 3 in Human Glycyl-tRNA Synthetase (hGlyRS) during Catalysis. J.Biol.Chem. (2016)

Release Date

2015-05-20

Peptides

Glycine--tRNA ligase: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

Glycine--tRNA ligase