SMTL ID : 4qfm.1

The structure of aIF2gamma subunit D152A from archaeon Sulfolobus solfataricus complexed with GDPCP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x GCP: PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER(Non-covalent)

GCP.1: 18 residues within 4Å: Chain A: V.18, D.19, H.20, G.21, K.22, T.23, T.24, M.45, T.46, G.96, N.149, K.150, V.153, S.184, A.185, L.186 Ligands: MG.2, FMT.4 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:D.19, A:H.20, A:G.21, A:K.22, A:K.22, A:T.23, A:T.23, A:T.24, A:T.24, A:T.46, A:G.96, A:N.149, A:K.150, A:K.150, A:S.184, A:A.185, A:L.186 Water bridges: A:T.23, A:T.46, A:T.46, A:T.46, A:H.97, A:A.152, A:V.153

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.23, T.46 Ligands: GCP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.23, A:T.46, H2O.9, H2O.14

21 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 6 residues within 4Å: Chain A: L.312, G.313, S.364, T.365, R.384 Ligands: FMT.18 Ligand excluded by PLIP FMT.4: 4 residues within 4Å: Chain A: V.153, L.186, H.187 Ligands: GCP.1 Ligand excluded by PLIP FMT.5: 2 residues within 4Å: Chain A: E.344, M.345 Ligand excluded by PLIP FMT.6: 3 residues within 4Å: Chain A: R.130, V.340 Ligands: FMT.10 Ligand excluded by PLIP FMT.7: 5 residues within 4Å: Chain A: G.258, L.259, R.260, N.310 Ligands: FMT.14 Ligand excluded by PLIP FMT.8: 1 residues within 4Å: Chain A: R.88 Ligand excluded by PLIP FMT.9: 2 residues within 4Å: Chain A: L.160, Y.163 Ligand excluded by PLIP FMT.10: 5 residues within 4Å: Chain A: R.130, V.134, F.169, V.340 Ligands: FMT.6 Ligand excluded by PLIP FMT.11: 5 residues within 4Å: Chain A: T.365, T.366, L.367, R.384 Ligands: FMT.12 Ligand excluded by PLIP FMT.12: 4 residues within 4Å: Chain A: M.358, T.365 Ligands: FMT.11, FMT.18 Ligand excluded by PLIP FMT.13: 4 residues within 4Å: Chain A: I.32, Y.51, A.52, E.53 Ligand excluded by PLIP FMT.14: 4 residues within 4Å: Chain A: Y.269, L.312, R.384 Ligands: FMT.7 Ligand excluded by PLIP FMT.15: 1 residues within 4Å: Chain A: Q.165 Ligand excluded by PLIP FMT.16: 1 residues within 4Å: Chain A: E.252 Ligand excluded by PLIP FMT.17: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP FMT.18: 2 residues within 4Å: Ligands: FMT.3, FMT.12 Ligand excluded by PLIP FMT.19: 2 residues within 4Å: Chain A: P.182, N.190 Ligand excluded by PLIP FMT.20: 2 residues within 4Å: Chain A: D.250, S.277 Ligand excluded by PLIP FMT.21: 6 residues within 4Å: Chain A: W.33, S.35, E.40, G.44, M.45, T.46 Ligand excluded by PLIP FMT.22: 3 residues within 4Å: Chain A: R.43, M.45, V.99 Ligand excluded by PLIP FMT.23: 3 residues within 4Å: Chain A: K.332, Y.333, W.410 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.24: 1 residues within 4Å: Chain A: M.111 2 PLIP interactions: 2 interactions with chain A Water bridges: A:A.109, A:M.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kravchenko, O.V. et al., The structure of aIF2gamma subunit D152A from archaeon Sulfolobus solfataricus complexed with GDPCP. To be Published

Release Date

2015-06-03

Peptides

Translation initiation factor 2 subunit gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Translation initiation factor 2 subunit gamma