SMTL ID : 4qg3.1

Crystal structure of mutant ribosomal protein G219V TthL1 in complex with 80nt 23S RNA from Thermus thermophilus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: P.1, K.2, H.3, R.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.2, A:H.3 SO4.2: 2 residues within 4Å: Chain A: K.46, R.210 4 PLIP interactions: 4 interactions with chain A Salt bridges: A:K.46, A:R.210 Water bridges: A:K.46, A:R.210 SO4.11: 3 residues within 4Å: Chain B: C.24, C.25, U.26 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.36 Water bridges: A:K.36, A:K.36 SO4.12: 2 residues within 4Å: Chain B: G.8, U.9 No protein-ligand interaction detected (PLIP) SO4.13: 2 residues within 4Å: Chain B: C.57, G.58 No protein-ligand interaction detected (PLIP)

8 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 2 residues within 4Å: Chain A: K.205, G.206 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.204, A:G.206 IPA.4: 2 residues within 4Å: Chain A: V.62, S.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.63 IPA.5: 5 residues within 4Å: Chain A: G.95, G.96, E.97, E.98, I.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.96, A:E.98, A:I.99 IPA.6: 4 residues within 4Å: Chain A: G.60, T.61, K.141, H.199 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.61 Hydrogen bonds: A:T.61, A:T.61 IPA.7: 2 residues within 4Å: Chain A: K.205, R.210 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.205 Hydrogen bonds: A:R.210, A:R.210 IPA.8: 2 residues within 4Å: Chain A: Q.71, K.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.71 IPA.9: 1 residues within 4Å: Chain A: P.65 No protein-ligand interaction detected (PLIP) IPA.16: 3 residues within 4Å: Chain B: G.6, G.16, U.76 No protein-ligand interaction detected (PLIP)

4 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.10: 4 residues within 4Å: Chain A: E.85, G.150, E.151, R.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.154, A:R.154 BME.14: 2 residues within 4Å: Chain B: C.74, C.75 No protein-ligand interaction detected (PLIP) BME.15: 4 residues within 4Å: Chain B: A.69, C.70, C.71, A.72 No protein-ligand interaction detected (PLIP) BME.18: 2 residues within 4Å: Chain B: G.29, G.53 No protein-ligand interaction detected (PLIP)

1 x URE: UREA(Non-functional Binders)

URE.17: 3 residues within 4Å: Chain B: C.34, C.35, G.48 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Tishchenko, S. et al., Protein-RNA affinity of ribosomal protein L1 mutants does not correlate with the number of intermolecular interactions. Acta Crystallogr.,Sect.D (2015)

Peptides

50S ribosomal protein L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

50S ribosomal protein L1