SMTL ID : 4qg6.1

crystal structure of PKM2-Y105E mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.21 Å

Oligo State

homo-tetramer

Ligands

4 x PRO: PROLINE(Non-covalent)

PRO.1: 6 residues within 4Å: Chain A: N.48, N.74, H.468, Y.470, I.473, F.474 3 PLIP interactions: 2 Ligand-Ligand interactions, 1 interactions with chain A Hydrogen bonds: P.1, P.1, A:N.74 PRO.2: 8 residues within 4Å: Chain B: N.48, G.50, N.74, H.468, Y.470, I.473, F.474, P.475 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:H.468 PRO.3: 7 residues within 4Å: Chain C: N.48, T.49, N.74, H.468, Y.470, I.473, F.474 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Ligand interactions Hydrogen bonds: C:N.74, P.3, P.3 PRO.4: 7 residues within 4Å: Chain D: N.48, G.50, N.74, H.468, Y.470, I.473, F.474 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Ligand interactions Hydrophobic interactions: D:H.468 Hydrogen bonds: D:N.74, P.4, P.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, P. et al., Structural insight into mechanisms for dynamic regulation of PKM2. Protein Cell (2015)

Release Date

2015-02-25

Peptides

Pyruvate kinase PKM: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Pyruvate kinase PKM