SMTL ID : 4qgt.1

The Crystal Structure of Human IgG Fc Domain with Enhanced Aromatic Sequon

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG.1: 8 residues within 4Å: Chain A: F.27, F.29, K.32, T.46, D.51, N.83, S.84, R.87 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.32

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 11 residues within 4Å: Chain B: F.27, F.29, K.32, V.50, D.51, F.81, N.83, T.85, R.87, K.120 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.87, B:K.32, B:K.32

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 1 residues within 4Å: Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, W. et al., Stabilizing the CH2 Domain of an Antibody by Engineering in an Enhanced Aromatic Sequon. Acs Chem.Biol. (2016)

Release Date

2015-04-08

Peptides

Hepatitis B virus receptor binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hepatitis B virus receptor binding protein