- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- monomer
- Ligands
- 1 x 32Q: (2S)-2-[4-(aminomethyl)benzyl]-3-[(R)-[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]propanoic acid(Non-covalent)
- 1 x 32R: (2R)-2-[4-(aminomethyl)benzyl]-3-[(R)-[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]propanoic acid(Non-covalent)
32R.2: 14 residues within 4Å:- Chain A: K.139, N.159, P.178, F.179, T.202, R.206, N.207, V.208, Y.244, D.245, L.246, D.247, R.306
- Ligands: GOL.7
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:P.178, A:F.179, A:F.179, A:F.179, A:R.206, A:V.208, A:D.247
- Hydrogen bonds: A:N.159, A:N.159
- Water bridges: A:R.206
- 1 x IMD: IMIDAZOLE(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 4 residues within 4Å:- Chain A: Y.199, F.200, T.201, K.230
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.201, A:K.230
GOL.5: 5 residues within 4Å:- Chain A: P.588, K.589, H.590, E.591, K.592
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.589, A:H.590, A:E.591, A:K.592
GOL.6: 4 residues within 4Å:- Chain A: A.695, H.696, E.698, T.699
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:A.695, A:T.699, A:T.699
- Water bridges: A:T.699
GOL.7: 2 residues within 4Å:- Chain A: R.206
- Ligands: 32R.2
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.206, A:R.206
- 1 x ZN: ZINC ION(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
SO4.9: 3 residues within 4Å:- Chain A: M.472, T.473, D.474
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.473, A:T.473, A:D.474
SO4.10: 6 residues within 4Å:- Chain A: N.658, R.682, R.686, K.703, M.707, I.717
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.658
- Water bridges: A:K.703, A:K.703
- Salt bridges: A:R.682, A:R.686, A:K.703
SO4.11: 2 residues within 4Å:- Chain A: L.405, R.409
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.409
SO4.12: 3 residues within 4Å:- Chain A: R.639, L.643, R.758
8 PLIP interactions:8 interactions with chain A- Water bridges: A:R.639, A:R.639, A:R.691, A:R.758, A:R.758, A:R.758
- Salt bridges: A:R.639, A:R.758
SO4.13: 2 residues within 4Å:- Chain A: R.280, K.739
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.739
- Salt bridges: A:R.280, A:K.739
SO4.14: 3 residues within 4Å:- Chain A: T.568, R.571, R.572
6 PLIP interactions:6 interactions with chain A- Water bridges: A:N.541, A:N.541, A:R.571, A:R.572
- Salt bridges: A:R.571, A:R.572
SO4.15: 2 residues within 4Å:- Chain A: N.231, R.333
5 PLIP interactions:5 interactions with chain A- Water bridges: A:N.231, A:N.231, A:N.231, A:R.333
- Salt bridges: A:R.333
SO4.16: 2 residues within 4Å:- Chain A: A.495, R.502
2 PLIP interactions:2 interactions with chain A- Water bridges: A:A.495
- Salt bridges: A:R.502
SO4.17: 5 residues within 4Å:- Chain A: A.662, Q.667, Y.669, R.682, M.707
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.667, A:Y.669
- Water bridges: A:E.665, A:R.682
- Salt bridges: A:R.682
SO4.18: 3 residues within 4Å:- Chain A: N.834, K.841, K.845
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.834
- Water bridges: A:N.834, A:K.845, A:K.845, A:K.845
- Salt bridges: A:K.841, A:K.845
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vassiliou, S. et al., Structure-guided, single-point modifications in the phosphinic dipeptide structure yield highly potent and selective inhibitors of neutral aminopeptidases. J.Med.Chem. (2014)
- Release Date
- 2014-09-24
- Peptides
- Aminopeptidase N: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- monomer
- Ligands
- 1 x 32Q: (2S)-2-[4-(aminomethyl)benzyl]-3-[(R)-[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]propanoic acid(Non-covalent)
- 1 x 32R: (2R)-2-[4-(aminomethyl)benzyl]-3-[(R)-[(1R)-1-amino-3-phenylpropyl](hydroxy)phosphoryl]propanoic acid(Non-covalent)
- 1 x IMD: IMIDAZOLE(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 1 x ZN: ZINC ION(Non-covalent)
- 10 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vassiliou, S. et al., Structure-guided, single-point modifications in the phosphinic dipeptide structure yield highly potent and selective inhibitors of neutral aminopeptidases. J.Med.Chem. (2014)
- Release Date
- 2014-09-24
- Peptides
- Aminopeptidase N: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A