- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 9 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)
MPG.2: 10 residues within 4Å:- Chain A: L.95, F.96, L.103, A.111, Q.113, I.116, A.124
- Chain C: F.96
- Ligands: MPG.4, MPG.13
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.96, A:L.103, A:I.116
MPG.3: 17 residues within 4Å:- Chain A: M.31, I.35, G.38, L.39, K.47, Y.50, V.51, I.54, L.55, A.58, A.61, A.62
- Chain B: I.122, F.125, I.148, S.152, Y.159
12 PLIP interactions:7 interactions with chain A, 5 interactions with chain B- Hydrophobic interactions: A:V.51, A:I.54, A:L.55, A:A.58, A:A.61, B:I.122, B:F.125, B:F.125, B:F.125, B:I.148
- Hydrogen bonds: A:G.38, A:G.38
MPG.4: 19 residues within 4Å:- Chain A: R.114, D.115, G.117, A.118, G.121, A.124, F.125, V.128
- Chain C: K.47, E.48, V.51, I.52, L.55, I.59, A.62, F.96, L.100
- Ligands: MPG.2, MPG.13
10 PLIP interactions:4 interactions with chain A, 6 interactions with chain C- Hydrophobic interactions: A:A.124, A:V.128, C:I.52, C:L.55, C:A.62, C:F.96, C:L.100, C:L.100
- Hydrogen bonds: A:D.115, A:A.118
MPG.7: 19 residues within 4Å:- Chain B: E.48, V.51, I.52, L.55, I.59, A.62, S.63, S.66, A.89, F.96, L.100, L.103
- Chain C: R.114, G.117, G.121, A.124, F.125, V.128, V.132
15 PLIP interactions:8 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: B:L.55, B:I.59, B:I.59, B:A.62, B:A.89, B:F.96, B:L.100, C:A.124, C:F.125, C:V.128, C:V.132
- Hydrogen bonds: B:E.48, C:R.114
- Water bridges: C:R.114, C:D.115
MPG.8: 10 residues within 4Å:- Chain A: F.71, F.96
- Chain B: T.74, W.88, A.92, L.95, L.131, L.135, T.136, K.137
6 PLIP interactions:5 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:T.74, B:W.88, B:W.88, B:A.92, B:K.137, A:F.71
MPG.9: 7 residues within 4Å:- Chain A: L.39
- Chain B: T.147, I.151, V.154, F.155, Y.158, Y.159
5 PLIP interactions:4 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.151, B:F.155, B:F.155
- Hydrogen bonds: B:Y.159, A:L.39
MPG.10: 5 residues within 4Å:- Chain B: V.154, L.157, Y.158, V.161, E.166
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:Y.158, B:Y.158, B:V.161
MPG.11: 14 residues within 4Å:- Chain B: T.24, M.31, G.38, L.39, Y.50, I.54, L.55, A.61, A.62
- Chain C: I.122, F.125, I.151, S.152, Y.159
10 PLIP interactions:5 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:T.24, B:I.54, B:L.55, B:A.61, C:I.122, C:F.125, C:I.151, C:Y.159
- Hydrogen bonds: B:G.38, C:Y.159
MPG.13: 9 residues within 4Å:- Chain C: F.96, P.99, S.112, Q.113, R.114, I.116, V.120
- Ligands: MPG.2, MPG.4
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:Q.113, C:I.116, C:V.120
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, M.F. et al., Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity. J. Biol. Chem. (2015)
- Release Date
- 2015-07-29
- Peptides
- Bacteriorhodopsin-I: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x RET: RETINAL(Covalent)
- 9 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hsu, M.F. et al., Structural and Functional Studies of a Newly Grouped Haloquadratum walsbyi Bacteriorhodopsin Reveal the Acid-resistant Light-driven Proton Pumping Activity. J. Biol. Chem. (2015)
- Release Date
- 2015-07-29
- Peptides
- Bacteriorhodopsin-I: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C - Membrane
-
We predict this structure to be a membrane protein.