SMTL ID : 4qi6.1

Cellobiose dehydrogenase from Myriococcum thermophilum, MtCDH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 21 residues within 4Å: Chain A: G.67, I.68, P.73, M.74, L.79, I.80, Y.99, M.101, P.102, W.155, V.156, L.173, Q.174, Q.175, H.176, I.182, W.295, S.298, M.309, S.695, R.698 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:M.74, A:L.79, A:L.79, A:L.79, A:Y.99, A:Y.99, A:P.102, A:V.156, A:V.156, A:L.173, A:Q.175, A:I.182 Hydrogen bonds: A:M.74, A:Y.99, A:S.695 Salt bridges: A:R.698 pi-Stacking: A:Y.99 Metal complexes: A:H.176

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 34 residues within 4Å: Chain A: V.235, G.236, G.238, A.239, G.240, I.258, E.259, K.260, W.295, M.309, G.311, C.312, V.313, G.316, G.317, V.320, N.321, A.322, G.323, L.324, T.438, S.439, V.440, S.479, A.480, G.481, I.488, H.701, D.737, A.738, N.748, P.749, T.750, I.753 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:W.295, A:N.321 Hydrogen bonds: A:A.239, A:G.240, A:K.260, A:C.312, A:G.317, A:G.317, A:T.318, A:N.321, A:A.322, A:G.323, A:L.324, A:L.324, A:V.440, A:V.440, A:A.738, A:N.748, A:T.750, A:T.750 pi-Stacking: A:H.701

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.400, R.401, E.585 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.585 Hydrogen bonds: A:N.400, A:E.585 NAG.4: 4 residues within 4Å: Chain A: N.437, R.459, D.460, G.461 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.437 NAG.5: 5 residues within 4Å: Chain A: E.497, E.501, N.516, W.519, N.521 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.501, A:E.501, A:N.516, A:N.521 NAG.6: 2 residues within 4Å: Chain A: N.678, T.680 No protein-ligand interaction detected (PLIP)

5 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.7: 2 residues within 4Å: Chain A: S.195, D.198 No protein-ligand interaction detected (PLIP) MAN.8: 2 residues within 4Å: Chain A: T.197, D.198 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.198 MAN.9: 2 residues within 4Å: Chain A: T.204, K.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.205, A:K.205 MAN.10: 2 residues within 4Å: Chain A: E.110, T.206 No protein-ligand interaction detected (PLIP) MAN.11: 2 residues within 4Å: Chain A: T.226, G.227 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, T.C. et al., Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation. Nat Commun (2015)

Release Date

2015-07-15

Peptides

Cellobiose dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellobiose dehydrogenase