SMTL ID : 4qi7.2 (2 other biounits)

Cellobiose dehydrogenase from Neurospora crassa, NcCDH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 21 residues within 4Å: Chain A: W.65, G.67, V.68, A.73, M.74, L.79, I.80, T.81, Y.99, M.101, P.102, G.154, W.155, V.156, L.173, S.174, Q.175, H.176, M.180, G.181, Q.182 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:W.65, A:W.65, A:M.74, A:L.79, A:L.79, A:L.79, A:Y.99, A:Y.99, A:M.101, A:P.102, A:V.156, A:V.156, A:Q.175, A:Q.175 Hydrogen bonds: A:M.74, A:Y.99 Metal complexes: A:H.176

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 32 residues within 4Å: Chain A: V.235, G.236, G.238, A.239, G.240, I.258, E.259, K.260, W.295, M.309, G.311, C.312, V.313, G.316, G.317, N.321, A.322, L.324, T.438, A.439, V.440, S.479, A.480, G.481, I.488, N.699, D.736, A.737, N.747, P.748, T.749, I.752 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:W.295, A:N.699 Hydrogen bonds: A:G.237, A:A.239, A:G.240, A:K.260, A:G.311, A:V.313, A:G.317, A:N.321, A:A.322, A:V.440, A:V.440, A:A.737, A:N.747, A:T.749, A:T.749, A:T.749 pi-Cation interactions: A:H.700

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.119, H.122, T.124 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.119, A:T.124, A:T.124 NAG.4: 2 residues within 4Å: Chain A: E.275, N.278 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.278 NAG.5: 5 residues within 4Å: Chain A: N.400, R.401, E.584, T.586, V.592 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.592 Hydrogen bonds: A:N.400, A:E.584 NAG.6: 3 residues within 4Å: Chain A: K.497, K.504, N.515 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.497, A:K.504, A:N.515 NAG.7: 3 residues within 4Å: Chain A: V.377, N.380, N.541 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.380 NAG.8: 2 residues within 4Å: Chain A: N.555, T.557 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.555

2 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.9: 4 residues within 4Å: Chain A: T.222, N.460, G.461, Y.463 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.460, A:Y.463 MAN.10: 1 residues within 4Å: Chain A: T.226 No protein-ligand interaction detected (PLIP)

8 x PT: PLATINUM (II) ION(Non-covalent)(Non-functional Binders)

PT.11: 1 residues within 4Å: Chain A: P.781 No protein-ligand interaction detected (PLIP) PT.12: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PT.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) PT.14: 2 residues within 4Å: Chain A: K.331, Y.335 No protein-ligand interaction detected (PLIP) PT.15: 1 residues within 4Å: Chain A: K.273 No protein-ligand interaction detected (PLIP) PT.16: 1 residues within 4Å: Chain A: R.697 No protein-ligand interaction detected (PLIP) PT.17: 1 residues within 4Å: Chain A: K.433 No protein-ligand interaction detected (PLIP) PT.18: 1 residues within 4Å: Chain A: S.351 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.19: 3 residues within 4Å: Chain A: S.632, T.634, N.636 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, T.C. et al., Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation. Nat Commun (2015)

Release Date

2015-07-15

Peptides

Cellobiose dehydrogenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cellobiose dehydrogenase

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