SMTL ID : 4qik.3 (2 other biounits)

Crystal structure of the ROQ domain of human Roquin in complex with the TNF23 RNA duplex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

14 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: W.99, R.103, Q.108, F.109 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: G.111, P.112, A.113, M.114 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: C.58, Q.59, G.65, R.68 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: Y.11, K.15, Q.59, L.60, V.61 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: S.220, D.225, Q.226 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: Q.89, N.90 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: S.227, H.228, K.229, S.230 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: A.101, R.105 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: W.99, R.103, Q.108, F.109 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain B: E.62, E.63, R.66 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: C.58, Q.59, G.65, R.68 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain B: K.171, K.185, E.186 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: A.101, R.105 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: R.148, F.149 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.15: 6 residues within 4Å: Chain B: M.70, R.71, I.278, D.279, P.287, Q.291 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.71, B:D.279, B:Q.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, D. et al., The ROQ domain of Roquin recognizes mRNA constitutive-decay element and double-stranded RNA. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-07-16

Peptides

Roquin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Roquin-1

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