SMTL ID : 4qjy.1

Crystal structure of native Ara127N, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

homo-dimer

Ligands

11 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: Y.142, H.191, H.265, V.267, Y.271, C.335, A.411 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.81, A:H.265 Salt bridges: A:K.81, A:H.191 ACT.2: 3 residues within 4Å: Chain A: E.33, P.36, Y.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.33 ACT.3: 5 residues within 4Å: Chain A: Y.88, K.200, R.345, H.426, Y.427 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.200, A:R.345, A:H.426 ACT.4: 4 residues within 4Å: Chain A: Q.38, A.41, W.407, F.408 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.41, A:F.408 Hydrogen bonds: A:Q.38, A:Q.38 ACT.5: 5 residues within 4Å: Chain A: G.489, W.490, C.491, R.492 Chain B: R.614 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:R.492, B:R.614 ACT.6: 2 residues within 4Å: Chain A: R.619, Y.621 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.619 ACT.7: 7 residues within 4Å: Chain A: R.544, A.545, A.547, K.549 Chain B: K.549, A.571, N.646 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Water bridges: A:K.549 Salt bridges: A:K.549, B:K.549 ACT.8: 3 residues within 4Å: Chain A: R.345, R.346, E.349 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.349 Water bridges: A:R.345 Salt bridges: A:R.345, A:R.346 ACT.9: 8 residues within 4Å: Chain B: Y.142, H.191, H.265, V.267, Y.271, E.333, C.335, A.411 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.142 Water bridges: B:K.81, B:H.265 Salt bridges: B:K.81, B:H.191 ACT.10: 1 residues within 4Å: Chain B: P.36 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:P.36 ACT.11: 3 residues within 4Å: Chain B: R.345, R.346, E.349 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.345, B:R.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lansky, S. et al., Crystal structure of native Ara127N, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6. To be Published

Release Date

2015-06-10

Peptides

GH127 beta-L-arabinofuranosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GH127 beta-L-arabinofuranosidase

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