SMTL ID : 4qkb.1 (3 other biounits)

Crystal structure of seleno-methionine labelled human ALKBH7 in complex with alpha-ketoglutarate and Mn(II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.106, D.108, H.162 Ligands: AKG.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.106, A:D.108, A:H.162 MN.3: 2 residues within 4Å: Chain A: E.47, E.60 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.47, A:E.60 MN.4: 1 residues within 4Å: Chain A: E.174 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.174

1 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 14 residues within 4Å: Chain A: I.55, H.93, L.95, I.103, H.106, D.108, M.128, Y.150, H.162, R.182, S.184, I.186, R.188 Ligands: MN.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.103, A:I.186 Hydrogen bonds: A:Y.150, A:S.184 Salt bridges: A:H.93, A:H.106, A:R.182, A:R.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, G. et al., The atomic resolution structure of human AlkB homolog 7 (ALKBH7), a key protein for programmed necrosis and fat metabolism. J.Biol.Chem. (2014)

Release Date

2014-08-20

Peptides

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial

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