SMTL ID : 4qkn.1

Crystal structure of FTO bound to a selective inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.1: 14 residues within 4Å: Chain A: R.69, N.178, H.204, D.206, V.217, Y.268, H.280, V.282, R.289, S.291, T.293, R.295 Ligands: MN.3, GOL.4 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.178, A:Y.268, A:S.291 Water bridges: A:Y.268 Salt bridges: A:R.69, A:H.204, A:R.289, A:R.295

1 x JMS: 2-[(2,6-dichloro-3-methyl-phenyl)amino]benzoic acid(Non-covalent)

JMS.2: 10 residues within 4Å: Chain A: L.63, L.64, T.65, P.66, R.69, L.82, V.201, S.202, H.204 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.63, A:L.82, A:H.204 Hydrogen bonds: A:S.202

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain A: H.204, D.206, H.280 Ligands: OGA.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.204, A:D.206, A:H.280, H2O.3

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 10 residues within 4Å: Chain A: R.69, Y.79, Y.81, H.204, H.205, D.206, E.207, R.295 Ligands: OGA.1, JMS.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.69, A:R.69, A:Y.79, A:E.207, A:R.295, A:R.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, Y. et al., Meclofenamic acid selectively inhibits FTO demethylation of m6A over ALKBH5. Nucleic Acids Res. (2015)

Release Date

2014-12-03

Peptides

Alpha-ketoglutarate-dependent dioxygenase FTO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-ketoglutarate-dependent dioxygenase FTO