SMTL ID : 4qkx.1

Structure of beta2 adrenoceptor bound to a covalent agonist and an engineered nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: N.252, C.333, E.336, C.339 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.333 NA.2: 1 residues within 4Å: Chain A: N.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.10

1 x 35V: 4-[(1R)-1-hydroxy-2-({2-[3-methoxy-4-(2-sulfanylethoxy)phenyl]ethyl}amino)ethyl]benzene-1,2-diol(Non-covalent)

35V.3: 14 residues within 4Å: Chain A: C.242, I.243, W.258, D.262, V.263, C.340, D.341, F.342, S.352, S.356, N.414, N.433, W.434, Y.437 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.263 Hydrogen bonds: A:D.262, A:S.352, A:S.352, A:S.356, A:N.414, A:N.433 pi-Stacking: A:W.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weichert, D. et al., Covalent agonists for studying G protein-coupled receptor activation. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-07-23

Peptides

Beta-2 adrenergic receptor: A
R9 protein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Beta-2 adrenergic receptor

R9 protein

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