SMTL ID : 4qm0.3 (2 other biounits)

Crystal structure of RORc in complex with a tertiary sulfonamide inverse agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

2 x 39K: N-(2-methylpropyl)-N-({5-[4-(methylsulfonyl)phenyl]thiophen-2-yl}methyl)-1-phenylmethanesulfonamide(Non-covalent)

39K.1: 23 residues within 4Å: Chain A: C.26, Q.27, L.28, L.33, W.58, C.61, H.64, L.65, R.105, M.106, R.108, A.109, V.117, F.119, F.129, L.132, L.137, I.141, F.142, H.220, R.223, L.224, F.227 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.58, A:H.64, A:L.65, A:A.109, A:V.117, A:F.129, A:L.132, A:L.137, A:I.141, A:F.142, A:R.223, A:L.224, A:F.227 39K.3: 19 residues within 4Å: Chain B: Q.27, L.28, W.58, C.61, H.64, A.68, R.105, M.106, R.108, A.109, F.119, F.129, L.132, L.137, I.138, I.141, F.142, H.220 Ligands: DMS.4 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.58, B:W.58, B:H.64, B:A.68, B:A.109, B:L.132, B:L.137, B:I.138, B:I.141, B:F.142

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: L.28, H.64, F.118, F.119, E.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.120 pi-Cation interactions: A:H.64 DMS.4: 5 residues within 4Å: Chain B: H.64, F.118, F.119, E.120 Ligands: 39K.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.120 Water bridges: B:G.121 pi-Cation interactions: B:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fauber, B.P. et al., Reduction in lipophilicity improved the solubility, plasma-protein binding, and permeability of tertiary sulfonamide RORc inverse agonists. Bioorg.Med.Chem.Lett. (2014)

Release Date

2014-09-17

Peptides

Nuclear receptor ROR-gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nuclear receptor ROR-gamma

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