SMTL ID : 4qnn.1

Crystal Structure of phospholipase A 1 from hornet(Vespa basalis) venom

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: K.241 Ligands: HG.6, CL.8 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: K.298 Ligands: CL.8, CL.13, HG.19 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: E.238, K.241 Ligands: CL.4 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Ligands: CL.3, CL.5 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Ligands: CL.4, CL.11 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain B: K.241, H.242 Ligands: CL.11 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Ligands: CL.1, CL.2, HG.6, CL.13, HG.19 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain B: E.238, K.241 Ligands: CL.10, CL.16 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain B: E.238, K.241 Ligands: CL.9, CL.16 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: K.241 Ligands: CL.5, CL.7 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Ligands: CL.15 Ligand excluded by PLIP CL.13: 4 residues within 4Å: Chain B: K.72 Ligands: CL.2, CL.8, HG.19 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Ligands: CL.17, CL.21 Ligand excluded by PLIP CL.15: 1 residues within 4Å: Ligands: CL.12 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: K.241 Ligands: CL.9, CL.10 Ligand excluded by PLIP CL.17: 2 residues within 4Å: Ligands: CL.14, CL.21 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain B: K.298 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain C: K.298 Ligands: CL.21, CL.23, HG.24 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Ligands: CL.14, CL.17, CL.20, CL.23, HG.24 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain C: E.238, K.241, P.291 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Ligands: CL.20, CL.21, HG.24 Ligand excluded by PLIP CL.25: 1 residues within 4Å: Chain D: H.242 Ligand excluded by PLIP CL.26: 1 residues within 4Å: Ligands: CL.27 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain D: E.238 Ligands: CL.26 Ligand excluded by PLIP

3 x HG: MERCURY (II) ION(Non-covalent)

HG.6: 4 residues within 4Å: Chain A: K.241, H.242 Ligands: CL.1, CL.8 No protein-ligand interaction detected (PLIP) HG.19: 5 residues within 4Å: Chain B: E.243, N.272 Ligands: CL.2, CL.8, CL.13 No protein-ligand interaction detected (PLIP) HG.24: 4 residues within 4Å: Chain C: H.242 Ligands: CL.20, CL.21, CL.23 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chuang, C.Y. et al., Crystal Structure of phospholipase A 1 from hornet(Vespa basalis) venom. To be Published

Release Date

2015-06-24

Peptides

Phospholipase A 1 from hornet(Vespa basalis) venom: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Phospholipase A 1 from hornet(Vespa basalis) venom