SMTL ID : 4qod.1

The value crystal structure of apo quinone reductase 2 at 1.35A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.105, W.106 Chain B: M.117, D.118, L.121, F.127 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.121, A:W.106, A:W.106 GOL.2: 7 residues within 4Å: Chain A: H.12, S.17, F.18, N.19, P.193 Chain B: N.67 Ligands: GOL.3 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:F.18, A:N.19, A:N.19 Water bridges: A:H.12, B:F.66 GOL.3: 7 residues within 4Å: Chain A: K.16, S.17, F.18, P.193, E.194, R.201 Ligands: GOL.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.16, A:F.18, A:R.201, A:R.201 Water bridges: A:H.12 GOL.4: 6 residues within 4Å: Chain A: Y.68, G.69, D.118 Chain B: Y.105, W.106 Ligands: GOL.6 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Water bridges: A:G.69, A:T.72 Hydrogen bonds: B:W.106, B:W.106 GOL.6: 6 residues within 4Å: Chain A: F.127, F.179 Chain B: L.104, Y.105, W.106 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.106 Water bridges: B:F.107 GOL.7: 7 residues within 4Å: Chain B: H.12, S.17, F.18, N.19, P.193, E.194, R.201 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.12, B:F.18, B:N.19, B:N.19, B:R.201, B:R.201 Water bridges: B:T.148, B:T.149, A:N.67

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.174, H.178, C.223, T.224 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.174, A:H.178, A:C.223, A:C.223 ZN.8: 4 residues within 4Å: Chain B: H.174, H.178, C.223, T.224 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.174, B:H.178, B:C.223, B:C.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serriere, J. et al., The value crystal structure of apo quinone reductase 2 at 1.35A. To be Published

Release Date

2015-07-01

Peptides

Ribosyldihydronicotinamide dehydrogenase [quinone]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribosyldihydronicotinamide dehydrogenase [quinone]

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