SMTL ID : 4qoj.1

CRYSTAL STRUCTURE OF FMN QUINONE REDUCTASE 2 IN COMPLEX WITH RESVERATROL AT 1.85A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 20 residues within 4Å: Chain A: H.12, S.17, F.18, N.19, P.103, L.104, Y.105, W.106, F.107, T.148, T.149, G.150, G.151, Y.156, P.193, E.194 Chain B: Y.68, G.69, D.118 Ligands: STL.5 19 PLIP interactions: 1 interactions with chain B, 18 interactions with chain A Hydrophobic interactions: B:Y.68, A:Y.105, A:Y.105, A:Y.105 Hydrogen bonds: A:F.18, A:N.19, A:N.19, A:L.104, A:W.106, A:F.107, A:T.148, A:T.148, A:T.148, A:G.150, A:G.151, A:Y.156, A:E.194 Salt bridges: A:H.12 pi-Stacking: A:W.106 FMN.4: 20 residues within 4Å: Chain A: Y.68, G.69, D.118 Chain B: H.12, S.17, F.18, N.19, P.103, L.104, Y.105, W.106, F.107, T.148, T.149, G.150, G.151, Y.156, P.193, E.194 Ligands: STL.2 19 PLIP interactions: 17 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.105, B:Y.105, B:Y.105, A:Y.68 Hydrogen bonds: B:F.18, B:N.19, B:N.19, B:L.104, B:W.106, B:F.107, B:T.148, B:T.148, B:G.150, B:G.151, B:Y.156, B:Y.156, B:E.194 Salt bridges: B:H.12 Water bridges: A:N.67

2 x STL: RESVERATROL(Non-covalent)

STL.2: 16 residues within 4Å: Chain A: Y.68, G.69, T.72, D.118, L.121, C.122, F.127, Y.133, G.175, F.179 Chain B: W.106, F.107, G.151, Y.156, N.162 Ligands: FMN.4 13 PLIP interactions: 8 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.127, A:F.127, B:W.106, B:W.106, B:F.107 Hydrogen bonds: A:T.72, A:G.175, B:N.162, B:N.162 Water bridges: A:T.72, A:L.121, A:Q.123 pi-Stacking: A:F.179 STL.5: 15 residues within 4Å: Chain A: W.106, F.107, G.151, Y.156, N.162 Chain B: G.69, T.72, L.121, C.122, Q.123, F.127, Y.133, G.175, F.179 Ligands: FMN.1 11 PLIP interactions: 7 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.127, B:F.127, B:F.179, A:W.106, A:W.106, A:F.107 Hydrogen bonds: B:T.72, B:Y.133, A:N.162 Water bridges: B:T.72 pi-Stacking: B:F.179

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.174, H.178, C.223 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.174, A:H.178, A:C.223, A:C.223 ZN.6: 3 residues within 4Å: Chain B: H.174, H.178, C.223 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.174, B:H.178, B:C.223, B:C.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Serriere, J. et al., CRYSTAL STRUCTURE OF FMN QUINONE REDUCTASE 2 IN COMPLEX WITH RESVERATROL AT 1.85A. To be Published

Release Date

2015-08-12

Peptides

Ribosyldihydronicotinamide dehydrogenase [quinone]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribosyldihydronicotinamide dehydrogenase [quinone]

Related Entries With Identical Sequence