SMTL ID : 4qp5.1 (1 other biounit)

Catalytic domain of the antimicrobial peptidase lysostaphin from Staphylococcus simulans crystallized in the presence of phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.33, D.37, H.114, H.116 Ligands: PO4.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.33, A:D.37, A:D.37, A:H.116

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 10 residues within 4Å: Chain A: Y.24, L.26, I.28, H.33, D.37, H.83, Y.109, H.114, H.116 Ligands: ZN.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.24, A:Y.24 Water bridges: A:H.114 Salt bridges: A:H.33, A:H.83, A:H.114, A:H.116

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 11 residues within 4Å: Chain A: N.29, S.60, Y.62, G.63, G.64, G.65, Q.67, W.80, M.82, Q.118, N.126 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.60, A:G.64, A:Q.67, A:N.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sabala, I. et al., Crystal structure of the antimicrobial peptidase lysostaphin from Staphylococcus simulans. Febs J. (2014)

Release Date

2014-07-16

Peptides

Lysostaphin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysostaphin

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