SMTL ID : 4qpi.4 (3 other biounits)

Crystal structure of hepatitis A virus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-1-1-1-mer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.102, N.103, N.237, H.238 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.103, A:H.238 SO4.2: 5 residues within 4Å: Chain A: D.154, R.189, Q.232, I.233, A.234 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.154, A:Q.232 Salt bridges: A:R.189 SO4.6: 1 residues within 4Å: Chain B: H.76 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:N.92 Salt bridges: B:H.76 SO4.7: 4 residues within 4Å: Chain B: P.218, L.219, S.220, T.221 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.220, B:T.221 SO4.8: 1 residues within 4Å: Chain B: R.67 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.67 SO4.9: 6 residues within 4Å: Chain C: V.78, I.142, D.143, V.144, T.145, K.201 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:I.142, C:V.144, C:T.145 Salt bridges: C:K.201 SO4.10: 2 residues within 4Å: Chain C: P.65, R.221 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.221

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.193 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: R.193 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: E.174 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., Hepatitis A virus and the origins of picornaviruses. Nature (2015)

Release Date

2014-10-15

Peptides

Capsid protein VP1: A
Capsid protein VP2: B
Capsid protein VP3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

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