SMTL ID : 4qpn.1

Crystal Structure of Human Methyltransferase-Like Protein 21B

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.25 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 17 residues within 4Å: Chain A: A.54, R.56, V.57, W.58, A.61, G.84, A.85, G.86, D.105, L.106, L.132, S.133, W.134, A.151, D.152, Y.155, L.156 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.56, A:W.58, A:A.61, A:L.106, A:W.134, A:A.151, A:D.152 Water bridges: A:G.84, A:S.133, A:W.134, A:A.151 pi-Stacking: A:W.134, A:W.134, A:W.134

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: P.224, R.225 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.225 Water bridges: A:R.222, A:E.223 Salt bridges: A:R.225 SO4.3: 6 residues within 4Å: Chain A: F.47, G.48, S.49, R.50, L.51, G.52 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.48, A:R.50, A:G.52 Water bridges: A:S.49, A:L.51

14 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 5 residues within 4Å: Chain A: I.136, D.137, H.138, H.139, V.140 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: S.32, Q.45, V.57 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: K.79, P.142, N.144 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: D.100, V.101, Q.126, Q.128 No protein-ligand interaction detected (PLIP) UNX.8: 4 residues within 4Å: Chain A: Y.155, L.156, E.157, H.187 No protein-ligand interaction detected (PLIP) UNX.9: 1 residues within 4Å: Chain A: H.174 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain A: P.226, A.227 No protein-ligand interaction detected (PLIP) UNX.11: 2 residues within 4Å: Chain A: Q.207, R.208 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain A: H.139, F.141, H.169 No protein-ligand interaction detected (PLIP) UNX.13: 1 residues within 4Å: Chain A: L.203 No protein-ligand interaction detected (PLIP) UNX.14: 4 residues within 4Å: Chain A: D.59, L.62, S.63, E.212 No protein-ligand interaction detected (PLIP) UNX.15: 3 residues within 4Å: Chain A: Q.114, Q.128, V.129 No protein-ligand interaction detected (PLIP) UNX.16: 1 residues within 4Å: Chain A: F.34 No protein-ligand interaction detected (PLIP) UNX.17: 3 residues within 4Å: Chain A: Y.155, R.184, H.187 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tempel, W. et al., Crystal Structure of Human Methyltransferase-Like Protein 21B. TO BE PUBLISHED

Release Date

2014-07-09

Peptides

Protein-lysine methyltransferase METTL21B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein-lysine methyltransferase METTL21B