SMTL ID : 4qpo.1

Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain B: S.33, F.34, S.35 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:F.34, B:S.35, B:S.35, B:S.35 Water bridges: B:S.35, B:S.35 PO4.2: 3 residues within 4Å: Chain C: S.33, F.34, S.35 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:F.34, C:S.35 PO4.3: 4 residues within 4Å: Chain A: H.49, M.53 Chain C: K.21, R.22 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Salt bridges: C:K.21, C:R.22, A:H.49 PO4.4: 4 residues within 4Å: Chain B: H.49 Chain D: K.21, R.22, E.25 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain D Salt bridges: B:H.49, D:K.21, D:R.22 Hydrogen bonds: D:E.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, Y. et al., Mechanistic Basis of Plasmid-Specific DNA Binding of the F Plasmid Regulatory Protein, TraM. J.Mol.Biol. (2014)

Release Date

2014-09-03

Peptides

Relaxosome protein TraM: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Relaxosome protein TraM

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